UFO01517.5prime Sequence
1268 bp (1025 high quality bases) assembled on 2008-10-06
> UFO01517.5prime
CAGTCGACATGAAGACTGTGCCGAAAAAGAAGGAAACGGCCCTGCGCTTG
CGGGAGTCGCGCCGTGAGGAGCAGAAACCAGAGACGACAAACCTGCCGCC
GGACGACGACGCAGAGTCGGATTTGCCCATTCGGGGCCGTCCCTCGAAGA
AGCTGCTCATCCAGCAGCAACAGCAGCGTCAGTACCAGGTAAAGCTAGAT
CCGAAAGTCAAGACGGTCACGTCGGGCTCTAGCGAGAAGCCTTCGACATC
CTCGAGTGCAGCCGCAGCCGGCGCCGGAGGACGCATCAAGGCCAGGAGAG
TGCTCTACAAGAAGAGCGTTGGAGCAGCGGCAGTCGCCCAGAAGGCGCCC
GGCGAGACCTACGTAATGCGCCTGTTTGAGCGAAGTTTGGACCTGTCCAA
ATACCAGGATAAGACTCCTTTGTACCCCATATGCCGCGCATGGATGGCAA
ATCAACCCAAGAATCCAGCTGTGGGTGCATTTCAAACAGATGCTTCACTC
ACGGCCACCAAACGTGAGGACAACGGCGAAGAAATCCTGTCCCAAATTAA
AAGCGGCGAGATAAAGGTGATCAACCAGCTCCCGCAGGCCAAGTCCACGG
ATCTGCCCATAATTCCGCCTCGTCTGGAGTTCAGCCAGGAGGACAAGAAG
CGGGAAAAGGCTCTCCAAGGTGCCAGTACCTCCGATCTTCTGTCCTCCAA
TATGAACCGCTGGAAGAAAGTGCGCGGACACTGGATAAAGCATATCAAGA
AGTATGAAAAGGAGCGATATGAAGTTATTGACAAGATTATGAGCTTGGTC
TGCAAAAACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGGAGATCCTGGGTCATGACTAGTGCTTGGATTCTTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTTGAACAAATCCAGATGGAGTTCTTGGA
GGTCATTACTGGATTTTATCAACAGGGAGTCCAAGGCGAGCCTCGATATT
CAAATTACGCCCCCGCCCTGGCCACTTCATCGCAGTACCTGTGTGTTATT
CATTAGGCATTCTGGCCGGACTGGGTGGCCATCTACAAACGGCATATGAT
GTGACTTGTGAATTCGCCACGGACTTGGACCTTGTTTCCCCCTGGCCTAT
ATATTTGTGCCAATAGTGTGTCGGTGAAAGCACGGGGGGGGCGAAAGAGA
TGTGTGTCCCATCTATTT
UFO01517.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mip40-RA | 1092 | CG15119-RA | 100..900 | 9..809 | 4005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19291297..19292097 | 809..9 | 4005 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:18:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2397 | 151..201 | 120 | 70.6 | Plus |
UFO01517.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:16 Download gff for
UFO01517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip40-RA | 94..914 | 1..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:38:41 Download gff for
UFO01517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip40-RA | 101..921 | 1..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:04 Download gff for
UFO01517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip40-RA | 94..914 | 1..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:04 Download gff for
UFO01517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19291283..19292103 | 1..822 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:16 Download gff for
UFO01517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15178788..15179608 | 1..822 | 99 | | Minus |
