UFO01520.5prime Sequence
1180 bp (1011 high quality bases) assembled on 2008-10-06
> UFO01520.5prime
CAGTCGACATGTGTGGACGCACCTGTCTAACTCTAGACCCTGATCAGGTA
ATTTGTGCCTGTAAATATCCAAAAAAATCTACTCGAAAGGAGCCGGATTT
CAAAGAGAAAGATGATATGAAAGATGGGGAAGGATCCGAAATGGAGACTC
CCGAGTGGAGGGCGGAATACAACCTGGGTAGACGCTACCAGGCCTCCTAC
AACATAGCCCCTACTGATATTACGCCCGTGATCGTGTCCGCAGCTCATTT
TTCAGACGCCGAGGATCAAGAGTGCGCCCGCGTGGTAACGCCCATGATGT
GGGGCATGATTCCCTTTTGGCACAAGGGTGACTATCGGCGGCATGGCCTT
ACCACCAACAATTGCCGTCTGGAACACCTGATGGACTCCAAGCTCTATCG
CGGTCCCTTCAAGCGAGGTCAGCGGTGTGTAGTTATTTGCGAAGGATTCT
ATGAGTGGCAGACGGCTGGACCTGCGAAGAAGCCATCGGAGCGTGAGGCT
TACCTGGTATTCGTACCCCAGGCGGCGGATGTGAAGATCTACGACAAGAA
TACATGGTCGCCCCAGGATGTGAAGCTTTTGCGAATGGCTGGACTTTTTG
ACGTCTGGGAGGATGAAAGTGGCGACAAGATGTACAGCTACAGTATTATC
ACCTTCCAGTCCAGCAAAATTATGTCCTGGATGCACTACCGCATGCCAGC
GATCCTGGAAACCGAGCAGCAGATGAATGATTGGCTGGACTTTAAGCGAG
TTAGCGACAAGGAGGCCTTGGCTACATTGCGTCCGGCTACCGAACTGCAG
TGGCATCGTGTTACCAAGCTGGTAAACAACTCGCGAACAAAAGCGAGGAG
TGCAACAAGCCGATCGAATTGGCGGCTAAGCCCGCAAAGCCACCGATGAC
AAACGATGATGTCTTGCTGATGCCCGTAGAGCGGGAGATCAAATCAAGCA
AACGAGCGACGATGAGATCAGAAAAGAGCTACGACATGGGAGGACTCGCT
GACGCTCACCCGTAAGGAGCGCAGCGACCCGATCAGGACTTAGAGGATCG
TACGCAGCTCCCCCGCAACACGGGCACGCAGCTTCTAGAACATCGTGGCG
CGCGGCCAGTAATGCTACCTATCATCTAATCGATCCACTAGCCTAAGAAT
CTAACTGGACATGGGCTGTGGAATCTCACA
UFO01520.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11986-RA | 1262 | CG11986-RA | 55..1145 | 9..1067 | 4675 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9015569..9016269 | 29..729 | 3505 | 100 | Plus |
| 3R | 32079331 | 3R | 9016335..9016525 | 729..916 | 825 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:19:22 has no hits.
UFO01520.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:21 Download gff for
UFO01520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11986-RA | 50..1036 | 1..978 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:38:43 Download gff for
UFO01520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11986-RA | 50..1036 | 1..978 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:13 Download gff for
UFO01520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11986-RA | 50..1036 | 1..978 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:13 Download gff for
UFO01520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9015569..9016268 | 29..728 | 100 | -> | Plus |
| 3R | 9016335..9016596 | 729..978 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:21 Download gff for
UFO01520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4841291..4841990 | 29..728 | 100 | -> | Plus |
| arm_3R | 4842057..4842318 | 729..978 | 94 | == | Plus |
