UFO01521.5prime Sequence
1250 bp (956 high quality bases) assembled on 2008-10-06
> UFO01521.5prime
CAGTCGACATGTTCCAGGGCTGCTACGGCGGAACCCAGAAGCACGAGCCC
GACCTGCACATCGTCTTGGAGCGCGCGTGGCAACAGGGACTGCAGAAAGT
CATCGTTACCGCCGGCTGCCTGAAGGATGTGGATGAGGCACTGGAACTGG
CCTCCAAGGATGAGCGCATCTACACGACAGTGGGAACACATCCCACCCGG
TGCGAGGAATTCGTACCAGACCCAGAGGGCTACTATGACCAGTTGCGATC
CAGGATCAAGGCAAATCGAACCAAGGTGCGGGCCGTAGGAGAATGTGGTC
TAGACTACGATCGCTTGCACTTCTGCGCCCAGGAAACCCAGCGTCTGTAC
TTCGAGAAGCAGCTGGACCTAGCGGCCGAGTTCAAACTGCCTCTCTTTCT
GCACATGAGAAATGCTGCCGAGGACTTCATGGGCATCCTGGAAAGAAATC
GGAACAAGATCGAGGAGTGCGGCGGCGGAGTGGTGCACAGCTTTACAGGA
ACTTTGGAGGAGGCCCAGCGCATCCTCGCCTTCGGCGGTCTCTACATAGG
CTTCAATGGGTGCTCCCTAAAGACGGATGAAAACGCAGAAGTGGTGCGCA
AGCTACCCAACGACAGGATAATGCTAGAAACCGACTGCCCGTGGTGTGGT
ATTCGACCCTCGCATGCTGGACACAAGCACGTGACCACCAAGTTTCCCAC
CGTCAAGAAGAAAGAGAAATGGACAGCTGAATCCCTAATAGACGGACGCT
GTGAGCCTTGCCAAATCAGCCAAGTTTTGGAGTCTATTGCCGGAATCAAA
CAAGAGCCTAAAGAACAGCTGGCTGCGTTATACTACCAAAACACATTGGA
CTTGTTCTTCGGCACAGGAGAGAGTAAAGAAGCAAGCTTTTCTAGATCAT
TCGTTTGGCGCCGCGGGCCCAGGGTAGTGGTCATAATCATAATCATATTA
ATAATCATAATCCACAACTAGCCTAGGAAGATCTGGTCATGACTAGTGCT
TGAATCCTCACCAATAAAAACGCCCGGCGCCACCGAGCGTCCTGAACAAT
TCAGGATGGGAGTTCTGAAGTCATTAATTGATCTTTCCAACGGAGTCCAA
GCACCTCGATATCAAATTACGCCCCGCCCTGCCCATCATCGCAGATATCT
GTGTGATTCATAGCCATCCTGCCCGCAACTGAAAGCCATCCCACCACCCG
CCAGTAGTATACCCAGTATATCGCAACGCGATCATCGACAACCTTGTTTT
UFO01521.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3358-RG | 968 | CG3358-RG | 78..951 | 8..881 | 4370 | 100 | Plus |
| CG3358-RF | 1216 | CG3358-RF | 78..951 | 8..881 | 4370 | 100 | Plus |
| CG3358-RE | 950 | CG3358-RE | 60..933 | 8..881 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6923879..6924486 | 162..769 | 3040 | 100 | Plus |
| 2R | 25286936 | 2R | 6923505..6923659 | 8..162 | 775 | 100 | Plus |
| 2R | 25286936 | 2R | 6924551..6924664 | 768..881 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:25:05 has no hits.
UFO01521.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:01 Download gff for
UFO01521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3358-RE | 53..936 | 1..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:38:44 Download gff for
UFO01521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3358-RC | 66..949 | 1..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:35 Download gff for
UFO01521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3358-RE | 53..936 | 1..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:35 Download gff for
UFO01521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6923498..6923659 | 1..162 | 97 | -> | Plus |
| 2R | 6923880..6924486 | 163..769 | 100 | -> | Plus |
| 2R | 6924553..6924667 | 770..885 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:01 Download gff for
UFO01521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2811003..2811164 | 1..162 | 97 | -> | Plus |
| arm_2R | 2811385..2811991 | 163..769 | 100 | -> | Plus |
| arm_2R | 2812058..2812172 | 770..885 | 98 | == | Plus |
