UFO01527.5prime Sequence
1202 bp (971 high quality bases) assembled on 2008-10-06
> UFO01527.5prime
CAGTCGACATGTCATTGGAACAGCTGAAAAGCGATGTGGCCGAGCTGGCG
GCCTTCCTGCAGCAGGCGAAAGGTGCCCGCGTAAAAGACGTGCTGACCAC
CGCTAAAGCGGAGGCGGAACGGGAGATTGTCAATCTGGAGTTGAAGGCCA
AAATTGCGGCAGAGCGACAGGCCACCGGGTCGAGCGAAGCCAAGAGATAT
CTGCACGAGCTGACCGACTACGGCTGGGACCAGAGCGCCAAGTTCGTGAA
GCTCTTCATCACCTTGAACGGAGTGCAGGGCTGCACGGAGGAGAATGTGA
CAGTCACCTACACACCTAACTCGTTGCAGCTCCATGTGCGCGATCTTCAG
GGCAAGGACTTTGGGCTGACCGTAAACAATCTGCTGCACAGTATCGATGT
GGAGAAGAGCTACCGAAAGATCAAGACCGACATGGTGGCCATCTATCTGC
AGAAGGTTGAGGACAAGCACTGGGATGTGCTCACCGCTATCCAGAAGCGT
TTGAAGCAAAAGAAGGACAGCGAATTGTCCAAAGATGGCGACAATCCCGA
ATCGGCGCTTGTTAACATCATGAAGAAGATGTACAACGACGGTGACTCCA
AGACGAAGCAGATGATCGCCAAAGCTTGGACCGAGAGTCAGGATAAGGCG
AAGCTTGGCAAGGAGACGGGCGGCGGATTGGATTCTTTCGACGATCTTGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGGAGTTCTGAGGTCATTACTGGATC
TATCACAGGAGTCCAAGGGGAGCTCGATATCAAATTACGCCCCGCCCTGC
CCCTCATCGCAGTACTGGTGTAATCATTAAGCATTCTGCCGACATGGAGG
CATCCCAAACGGCATGATGAACCTGATCGCCAGCGGCATCAGCACTGGTC
GGCTTGGGTATAATATTTGGCCATGGGTGAACGGGGGCGAAATTGTCTAT
TGGCCAGGTTTATCAACTGGGGTGAACTCACCAGGGATGGGCGTGAAGCA
AACAATTTCGATACTAGGAATTGGCGCGTTCCGGTAACGCGCCCATCTGT
GT
UFO01527.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3226-RA | 894 | CG3226-RA | 89..778 | 9..698 | 3450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6653229..6653732 | 698..195 | 2520 | 100 | Minus |
| X | 23542271 | X | 6653908..6654084 | 196..20 | 885 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:40:19 has no hits.
UFO01527.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:46 Download gff for
UFO01527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3226-RA | 89..778 | 9..698 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:38:47 Download gff for
UFO01527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3226-RA | 27..716 | 9..698 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:05 Download gff for
UFO01527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3226-RA | 89..778 | 9..698 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:05 Download gff for
UFO01527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6653229..6653730 | 197..698 | 100 | <- | Minus |
| X | 6653908..6654084 | 20..196 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:46 Download gff for
UFO01527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6547262..6547763 | 197..698 | 100 | <- | Minus |
| arm_X | 6547941..6548117 | 20..196 | 100 | | Minus |
