UFO01528.5prime Sequence
1194 bp (987 high quality bases) assembled on 2008-10-06
> UFO01528.5prime
CAGTCGACATGATGCTTTTCATGCTGCTGTTTAGTCGGCAGGGCAAACTG
CGGTTACAAAAGTGGTACATGGCCTATCCGGATAAGGTGAAAAAGAAGAT
CACCCGGGAACTGGTCACTACGATACTGGCCCGCAAGCCCAAAATGTGCT
CCTTTCTGGAGTGGAAGGACTGCAAAATTGTCTACAAAAGGTATGCCAGC
TTGTATTTCTGTTGCGCCATCGAGCAGAACGACAACGAACTGCTGACACT
GGAGATCATTCATCGCTATGTGGAGCTGTTGGATAAGTACTTCGGCAGCG
TCTGCGAGCTGGACATTATCTTTAACTTTGAAAAAGCATACTTTATCCTG
GATGAGCTGCTCATTGGCGGCGAAATCCAGGAGACGTCCAAAAAGAACGT
ACTTAAGGCGATTGCCTCGCAGGATCTGCTCCAAGAGGATGAGACCCCGC
AGAGTTTCTTCGACGATCACGGCCTGGGCGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCC
AGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGA
GCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGT
AATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATG
AACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTT
GCCCATGGTGAAAACGGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAA
ATCAAAACTGGTGAACTCACCCAGGGATTGGCTGAGACGAAAAACATATT
CTCAAAACCCTTTAGGGAATAGGCCAGGTTTCACCGTACACGCCACATCT
TGCGATATATGTGTAGAACTGCCGGAATCGTCTGTATTCCACCCAAGCGA
TGAAACGTTTCAGTTGCCTCATGAACGGTGTACAGGGTGACCCTATTCAA
TCACAGGCTCACGCTCCATTGCATCCATTCCGAGACATCTCAGGCGGCAA
ATGGATAAGGCCGATAACGTGGCCTATTTTTCTTACGGCCTTTA
UFO01528.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1sigma-RA | 1079 | CG5864-RA | 146..616 | 9..479 | 2355 | 100 | Plus |
| AP-1sigma-RC | 795 | CG5864-RC | 146..576 | 9..439 | 2155 | 100 | Plus |
| AP-1sigma-RB | 1181 | CG5864-RB | 146..576 | 9..439 | 2155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23959031..23959212 | 11..192 | 910 | 100 | Plus |
| 3R | 32079331 | 3R | 23959456..23959594 | 300..438 | 695 | 100 | Plus |
| 3R | 32079331 | 3R | 23959278..23959390 | 189..301 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 23962049..23962092 | 436..479 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:58:39 has no hits.
UFO01528.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:48 Download gff for
UFO01528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1sigma-RA | 146..622 | 9..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:38:48 Download gff for
UFO01528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1sigma-RA | 143..619 | 9..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:44 Download gff for
UFO01528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1sigma-RA | 146..622 | 9..487 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:44 Download gff for
UFO01528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23962051..23962092 | 438..479 | 100 | == | Plus |
| 3R | 23959024..23959210 | 1..190 | 97 | -> | Plus |
| 3R | 23959280..23959388 | 191..299 | 100 | -> | Plus |
| 3R | 23959456..23959593 | 300..437 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:48 Download gff for
UFO01528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19787773..19787814 | 438..479 | 100 | == | Plus |
| arm_3R | 19784746..19784932 | 1..190 | 97 | -> | Plus |
| arm_3R | 19785002..19785110 | 191..299 | 100 | -> | Plus |
| arm_3R | 19785178..19785315 | 300..437 | 100 | -> | Plus |
