UFO01529.5prime Sequence
1187 bp (1013 high quality bases) assembled on 2008-10-06
> UFO01529.5prime
CAGTCGACATGAATCGACGCAACAAGCGGACGTCGTACTACCAATACGAA
GTATACCTAGACTTCATGGAGGAGAATCCCCCGATGTCGGCCAACAAACT
GAGTCGCACCCAGGACGGCAAGAAGTGGAAGGAGCTCAGCGATCTGCTAA
ACAAGTGCTCCACGGGTCCCACTTTGTCGCCCGAGGAATGGCGAAAGCGC
CTCAACGACTGGAAGAACAGCACGCGCTCCAAATACCGACGCAGCATCAA
CTCGGATGACAAGAGCAATGCAATGACTCCTCTGGAGAACAGAGCCCTGC
AGATCTTCTCCTTAGAACCGAATTTTCGCGAGGGAATTTCGATGCGCCTG
CACGAACTGATGGAGGAGCAAGAGGAACTGGATGAAGAAGAGAATGAGAA
CCTGGAGGAGTTGGTGGATGAGGAGGAGGAGGAGGAGGTGCAGTACCAGC
AGTTCATAGCAGAGCCTCACGAGCAAGCCAACCCAACGATCATCAATGGT
CACAGTGCCGCGAAAAAGCTAAGGCTCGATGGTTCCAGTGAGATTATCTA
CGAAGTCGCGGATGTCACATCTGATCAATCTGCCGCGAAAGAACCGTCTG
CCTTCTATGGAGAGAAAATCCAGGAGCAGCTGAAACGCATTTCGGACATA
CACGAGGCATCGCTGCACTTTAAGATAGCCCGCTTCAAGTACAATAATCC
CGGATTCGAGTACGTTCCGGAATTAGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGTCATTACTGGATCTATCAACAGGAGTCCAAGCGGAGCTCG
ATATCAATTACCGCCCCGGCCTGCCCCTCATCGCAGTACTGTGTAATTCA
TTAGCATTCTGCGACATGAAGCCATCACAAACGCATGATGACTGATCGCA
GGCGCATCAAGCACTTGTCGCTGCATATATATTTGCCATGTGTGAACCGG
GGCGAGAATGCATTTGCCAGGTTAATCGACTGTACTCCAGATGCTGAACC
AAACAATTCTCTATAACCTTAGAGAAATATGCGCAAG
UFO01529.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15107-RA | 1106 | CG15107-RA | 105..821 | 9..725 | 3585 | 100 | Plus |
| CG15107-RB | 1118 | CG15107-RB | 105..833 | 9..725 | 3455 | 98.4 | Plus |
| prod-RA | 1597 | CG18608-RA | 260..386 | 119..245 | 290 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18971829..18972188 | 555..196 | 1800 | 100 | Minus |
| 2R | 25286936 | 2R | 18972245..18972433 | 197..9 | 945 | 100 | Minus |
| 2R | 25286936 | 2R | 18971594..18971765 | 725..554 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:58:14 has no hits.
UFO01529.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:20:58 Download gff for
UFO01529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15107-RA | 105..825 | 9..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:38:49 Download gff for
UFO01529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15107-RA | 2..726 | 5..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:42 Download gff for
UFO01529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15107-RA | 105..825 | 9..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:42 Download gff for
UFO01529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18971829..18972186 | 198..555 | 100 | <- | Minus |
| 2R | 18972245..18972433 | 9..197 | 100 | | Minus |
| 2R | 18971590..18971763 | 556..731 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:20:58 Download gff for
UFO01529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14859095..14859268 | 556..731 | 98 | <- | Minus |
| arm_2R | 14859334..14859691 | 198..555 | 100 | <- | Minus |
| arm_2R | 14859750..14859938 | 9..197 | 100 | | Minus |
