UFO01530.5prime Sequence
1190 bp (798 high quality bases) assembled on 2008-10-06
> UFO01530.5prime
CAGTCGACATGTCTCGGGCGACCAGGGCTTTTAAAGTGCTGATTTCGCAT
CCAAATGTCCCAGCACCGGCTCTGGAACTGCTCCGATCCCGTGGAGCGGA
GACCATCATCTGCCAGAGTGTGCCGCCCTCGAGGGATGAGATCCTGCAGA
AGGTGCCCGGCGTGGATGCCATCTATTGGGCCCATTACCAGCCCCTGAAT
GCCGGAATCCTGGATGCTGCTGGATCCCAGCTGCGTTGCGTGAGCACCAT
GTCCTCCGGAATCGATTTTGTGGATATTCCGGAGTTCCAGAAGAGGGGAA
TCCCATTGGGCCACACTCCCGGGGTGGTGAAAAATGCAGTGGCCGATCTC
GCCATTGGCTTGATGATTGCAGCCGGTCGTCACTTTCATGCCGGTCGCAC
CGAAATCGAGAGGTCCCAATGGAAAATCGAGCAGATCAACTGGATGATGG
GTCAAGAGATTCGCGATTCCGTCATCGGTTTCTTTGGCTTTGGCGGTATT
AGTCAGGCCATCGCCAAGCGATTGCAGTGCTGGGATGTGGCCAAGATCAT
CTACCATACTCGCACCCGAAAAGGAAAACGATGGCGACTTCAAGGCAGAG
CATGTGTCGTTTGAACAACTTTTACAAGAAAGTGACTTTCCTGGTGGTAG
CTGCTCCACTTACAAACGAAACTAGAGAGAAATTCAATGGAAAGGCATTT
ATCTGATGAAGAGGAGTTCTGTGTTTGTCATGTGGCCAGAGGAGTCTGGT
AATCAAACTGACCTTCATGACGCCCTGAACAAATGGTACAATTTCTGCCG
CAAGCTGGATGAGACACCACCAGACCACTGCCCGCCATAGTCCTCTTCTC
AATGTGCCCATTGTGTATCTTTCCCCATAATGGGCACTCCAACAATGAGA
CTACCATGAAATGGGATTGCTTGCTGCCAATAATATTTTGAACCGCCTCC
AAGGAAGACCATGATTAAGCAGGCCTACGCAAGCTTTCTAGAACAATTTG
TTGGGCGGCGGGCCAAGGAGATGGCCCAAATCCTAATTAAATCTATCCTA
TTACCACATGCAAGGAGATCTGGTCATGACTAAGCTGGATTCCACCAAAA
AAGTCCGGGGCGATCCGAGCTCTGACATCGATGGATCAAGAGCCTTAGGA
ATTACTACAGGATTTACGCAGAGTCCATACAACTAATTAC
UFO01530.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31673-RA | 1126 | CG31673-RA | 58..1039 | 5..978 | 4260 | 96.7 | Plus |
| CG31673-RB | 1221 | CG31673-RB | 58..1036 | 5..978 | 4245 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20829666..20830075 | 5..414 | 2020 | 99.5 | Plus |
| 2L | 23513712 | 2L | 20830279..20830612 | 411..744 | 1480 | 98.8 | Plus |
| 2L | 23513712 | 2L | 20830679..20830790 | 751..860 | 305 | 92.9 | Plus |
| 2L | 23513712 | 2L | 20830862..20830940 | 866..943 | 205 | 92.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:28:13 has no hits.
UFO01530.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:47 Download gff for
UFO01530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31673-RA | 54..1026 | 1..965 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:38:50 Download gff for
UFO01530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31673-RA | 55..1027 | 1..965 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:48 Download gff for
UFO01530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31673-RA | 54..1026 | 1..965 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:48 Download gff for
UFO01530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20829662..20830073 | 1..412 | 98 | -> | Plus |
| 2L | 20830281..20830612 | 413..744 | 98 | -> | Plus |
| 2L | 20830671..20830796 | 745..865 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:47 Download gff for
UFO01530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20829662..20830073 | 1..412 | 98 | -> | Plus |
| arm_2L | 20830281..20830612 | 413..744 | 98 | -> | Plus |
| arm_2L | 20830671..20830796 | 745..865 | 91 | -> | Plus |
