UFO01531.5prime Sequence
1207 bp (985 high quality bases) assembled on 2008-10-06
> UFO01531.5prime
CAGTCGACATGTTGTTAAAAGTGCCATCTGTGGACTGGACGGATCAAATA
ATTTACGTAGTGGACGACGACGAGTCGCTGTCAGACATCGACGATGAGCC
AGATTTTTCCGAATACATGTGGATGGAGAACGAGGAGGAGTTCGACAAGA
ACGAACTGCAACGGCTGGAGGAGGAAGAGATTATGCAGGAGTGTTTTGAA
GCCATGATAGAAGACGAGCTGGAGGAGCAGATCAACGAATGGGAGAAGGC
CAAGACGGACGAGCAGAACACGGCACTTTCCGCACTACCCAAGAGCCAGT
GTGATGTTGAAAAGTCTGTTCTGAATCCGATGGCTGATGAGTTTGTTCCG
CGTTGTCATGTTATAGATTTCCCTGCCTCAGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGAT
GAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATAT
TTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTT
TAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACA
TATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTCCCCGTAACACG
CCACATCTTGCGAATATATGTGTAGAACTGCCGGAAATCGTCGTGGTATT
CACTCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAACGTGTAACAG
GGTGACATTATCCCTTATCACACTCACGTCTTTCATTGCCATACGAAATT
CGGATGGACATTCATCAGCGGGCAGATGTGGATAAGGCCGATAACTTGTG
TCTAATTTTCTTTACGTCTTTAAAGCGTATATCAGCTACGCCTGGCTAGT
ACATTGGAACACGTGACGTGAAATGTCTCTCAGAAGTGTCTCTCTTTACC
AGTAATC
UFO01531.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Paip2-RB | 1045 | CG12358-RB | 334..705 | 9..380 | 1860 | 100 | Plus |
| Paip2-RA | 1970 | CG12358-RA | 348..719 | 9..380 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12983740..12983884 | 9..153 | 725 | 100 | Plus |
| 3R | 32079331 | 3R | 12984111..12984237 | 254..380 | 635 | 100 | Plus |
| 3R | 32079331 | 3R | 12983947..12984048 | 153..254 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:26:12 has no hits.
UFO01531.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:28 Download gff for
UFO01531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paip2-RA | 348..725 | 9..386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:01 Download gff for
UFO01531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paip2-RA | 348..725 | 9..386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:24 Download gff for
UFO01531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paip2-RA | 348..725 | 9..386 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:24 Download gff for
UFO01531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12983732..12983883 | 1..152 | 98 | -> | Plus |
| 3R | 12983947..12984047 | 153..253 | 100 | -> | Plus |
| 3R | 12984111..12984237 | 254..380 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:28 Download gff for
UFO01531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8809669..8809769 | 153..253 | 100 | -> | Plus |
| arm_3R | 8809833..8809959 | 254..380 | 100 | == | Plus |
| arm_3R | 8809454..8809605 | 1..152 | 98 | -> | Plus |
