UFO01532.5prime Sequence
1203 bp (1043 high quality bases) assembled on 2008-10-06
> UFO01532.5prime
CAGTCGACATGACTGACTTTGGCGGAGACTCGGGTGGCCGACTAAAGGGC
GTAACTATAGTAAAGCCCATAGTGTATGGAAACATTGCCAGATCCTTCGG
CAAGAAGCGCGAGGAGGACGGACACACGCATCAGTGGAAAGTCTATTTGA
AGCCCTATTTCAACGAGGACATGTCCATTTACGTGAAAAAGGTGCATTTC
AAGCTGCACGAGAGCTACGCTAATCCGAACAGGATCGTAGTTAAGCCGCC
CTACGAGATTACCGAGACCGGATGGGGTGAATTCGAGGTGATCATCAAGA
TATACTTCAACGATCAATCAGAGCGCCCGGTTACCTGCTACCACATCCTT
AAGCTCTTCCAATCGCCTGTGGTCGATGGCGAGCTCTCCTCTAGCACCAC
TATGGACACTAAGAAGGGCCTGGTCTCGGAGTCGTATGAGGAAATAGTGT
TCCAGGAGCCCACCCAGATCTTGCAGCATTATCTCCTGCTTTCAGAACAG
AGCGCCAATGGGTTGCTAACCCATGACACTGACTTTGAGGAAAAGAAGAC
GAAAACGTTGGACAACATTGTGAATGTAAAACAGAAGGTCAAGGGGGAGA
TTGTTACACTTAAGGACAAACTAAAGCTGGCACGTGAGACCATTTCGAAG
TTCAAGGCAGAATTGGCGAAGGTGCAGAAGCAACCTGCGGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCTGCCACTCATCGCAG
TACTGTTGTATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACG
GCATGATGAACCTGATCGCAGCGGCATCAGCACTTGTCGCTTGCGTTTAT
ATTGCCATGTGAAACGGGGCGAAAAGTGGTCATATGGCCACGTTTAAATC
AACTGTGACTCACCAGGATTGGCTTGAAACGAAACATTTTCGATAAGCTA
GGAAATGGCCAGTTTTCACGTATACGCCCACATCTGCGAATATGTGTTGA
TTA
UFO01532.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gas41-RA | 840 | CG9207-RA | 92..772 | 9..689 | 3405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6949591..6950116 | 534..9 | 2630 | 100 | Minus |
| 2L | 23513712 | 2L | 6949378..6949532 | 689..535 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:14:04 has no hits.
UFO01532.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:36 Download gff for
UFO01532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gas41-RA | 84..775 | 3..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:02 Download gff for
UFO01532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gas41-RA | 12..703 | 3..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:40 Download gff for
UFO01532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gas41-RA | 84..775 | 3..693 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:40 Download gff for
UFO01532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6949591..6950124 | 3..534 | 99 | | Minus |
| 2L | 6949374..6949532 | 535..693 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:36 Download gff for
UFO01532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6949374..6949532 | 535..693 | 98 | <- | Minus |
| arm_2L | 6949591..6950124 | 3..534 | 99 | | Minus |
