UFO01533.5prime Sequence
1051 bp (930 high quality bases) assembled on 2008-10-06
> UFO01533.5prime
CAGTCGACATGGCTGAGGAATCATTCTACGGAGTCACTTTGACCGCCGAG
AGCGACAGCGTCACGTGGGATGTGGACGAGGACTACGCACGCGGCCAGAA
GCTGGTCATCAAACAGATCCTCTTGGGCGCCGAGGCCAAGGAGAACGAGT
TCAACGTGGTCGAGGTGAACACACCCAAGGACTCCGTGCAAATTCCCATC
GCCGTATTGAAGGCCGGAGAGACCCGCGCCGTCAATCCCGACGTGGAGTT
CTACGAGTCGAAGGTGACATTCAAGCTGATCAAGGGCAGCGGACCCGTCT
ACATCCACGGGCACAACATCAAGGACGATGTGGAGGTGGTCGACATGGAG
GAGGATGACGAGGAGGATGATGTCGCCGAGGACGAGGAGGACGAGCACCC
AAAGAAGCGCGCCAAGATCGAGAACGCCGCCGATGGTAAAAATGCCAAGA
ACAACAAGAAGAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGATCGCCAGC
GGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAAC
GGGGGCGAAGAAGTTGTCCATATTGCCACGTTTAAATCAAAACTGGTGAA
ACTCACCCAAGGGATGGCTGAGACGAAAAACATATTCCTCAATAAACTCT
TTAAGGAAATAGGCCAGTTTTCACCGTAACACGCACATCTTGCGAATATA
TGTGTAGAAACTGCCGGAATCGTCTGGTATTCACTCAGACCGAATGAAAA
A
UFO01533.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nlp-RB | 914 | CG7917-RB | 83..539 | 8..464 | 2285 | 100 | Plus |
Nlp-RA | 1080 | CG7917-RA | 249..705 | 8..464 | 2285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30009676..30009977 | 163..464 | 1510 | 100 | Plus |
3R | 32079331 | 3R | 30005287..30005425 | 30..168 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:48:03 has no hits.
UFO01533.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:20 Download gff for
UFO01533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-RA | 249..714 | 8..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:04 Download gff for
UFO01533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-RA | 249..714 | 8..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:34 Download gff for
UFO01533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nlp-RA | 249..714 | 8..475 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:34 Download gff for
UFO01533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30009678..30009977 | 165..464 | 100 | == | Plus |
3R | 30005033..30005055 | 8..30 | 100 | -> | Plus |
3R | 30005288..30005421 | 31..164 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:20 Download gff for
UFO01533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25830755..25830777 | 8..30 | 100 | -> | Plus |
arm_3R | 25831010..25831143 | 31..164 | 100 | -> | Plus |
arm_3R | 25835400..25835699 | 165..464 | 100 | == | Plus |