Clone UFO01533 Report

Search the DGRC for UFO01533

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:15
Well:33
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptNlp-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO01533.5prime Sequence

1051 bp (930 high quality bases) assembled on 2008-10-06

> UFO01533.5prime
CAGTCGACATGGCTGAGGAATCATTCTACGGAGTCACTTTGACCGCCGAG
AGCGACAGCGTCACGTGGGATGTGGACGAGGACTACGCACGCGGCCAGAA
GCTGGTCATCAAACAGATCCTCTTGGGCGCCGAGGCCAAGGAGAACGAGT
TCAACGTGGTCGAGGTGAACACACCCAAGGACTCCGTGCAAATTCCCATC
GCCGTATTGAAGGCCGGAGAGACCCGCGCCGTCAATCCCGACGTGGAGTT
CTACGAGTCGAAGGTGACATTCAAGCTGATCAAGGGCAGCGGACCCGTCT
ACATCCACGGGCACAACATCAAGGACGATGTGGAGGTGGTCGACATGGAG
GAGGATGACGAGGAGGATGATGTCGCCGAGGACGAGGAGGACGAGCACCC
AAAGAAGCGCGCCAAGATCGAGAACGCCGCCGATGGTAAAAATGCCAAGA
ACAACAAGAAGAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGATCGCCAGC
GGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAAC
GGGGGCGAAGAAGTTGTCCATATTGCCACGTTTAAATCAAAACTGGTGAA
ACTCACCCAAGGGATGGCTGAGACGAAAAACATATTCCTCAATAAACTCT
TTAAGGAAATAGGCCAGTTTTCACCGTAACACGCACATCTTGCGAATATA
TGTGTAGAAACTGCCGGAATCGTCTGGTATTCACTCAGACCGAATGAAAA
A

UFO01533.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
Nlp-RB 914 CG7917-RB 83..539 8..464 2285 100 Plus
Nlp-RA 1080 CG7917-RA 249..705 8..464 2285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30009676..30009977 163..464 1510 100 Plus
3R 32079331 3R 30005287..30005425 30..168 695 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:48:03 has no hits.

UFO01533.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:20 Download gff for UFO01533.5prime
Subject Subject Range Query Range Percent Splice Strand
Nlp-RA 249..714 8..475 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:04 Download gff for UFO01533.5prime
Subject Subject Range Query Range Percent Splice Strand
Nlp-RA 249..714 8..475 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:34 Download gff for UFO01533.5prime
Subject Subject Range Query Range Percent Splice Strand
Nlp-RA 249..714 8..475 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:34 Download gff for UFO01533.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30009678..30009977 165..464 100 == Plus
3R 30005033..30005055 8..30 100 -> Plus
3R 30005288..30005421 31..164 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:20 Download gff for UFO01533.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25830755..25830777 8..30 100 -> Plus
arm_3R 25831010..25831143 31..164 100 -> Plus
arm_3R 25835400..25835699 165..464 100 == Plus