UFO01535.5prime Sequence
1172 bp (970 high quality bases) assembled on 2008-10-06
> UFO01535.5prime
CAGTCGACATGAGTGCCACAGATGCATCTACAGCCGATAGTGGCGCTAAA
CGAAAATCTTCTGAAGATATCACACACAATTGCAACGCAAATTTTGGCGC
AGAAAACGGCCTAAGAAAGCGCGTAAAATCGGAGGAGCCTGTGGCGTCCA
TTAAAGATGAAACAAATCCTGAAGTTCCTATGAAAATAAAAGCTGAGCCA
GTGGAGAATGCAGATGAGCCCACAAGCACTACTCCTGCGATCAAGATTAA
AGCCGAACCAGCGGACAATGGAAACTCACCTGCAGCTGCGATGGTAAAAA
CCGAGCCCACTAATAGCAATGCACAGGACGCCGCCGACGAGTCTACCGTA
TCTTCAAGCAGTATTAGGACTTCTTGTCGCTTCGGCATACGATGCTACAG
GCGAAATCCAGCTCATCGTAGTGCAGAAGCTCATCCGGGGGATCAGGATT
ACCGGCGACCAAACTTTCCAGCGCCACCCCTCGGAACTCCAGCTTGTCCT
TTCGGTAACGCATGCTATCGCCGTAACCCAGTTCACTTCCAGGATTACTC
CCATCCTGCGGATTGTAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCAC
AACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAAT
AAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTT
CTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATC
AAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAA
GCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACTTGAATC
GCCAGCGGCATCAGCACCTTGTCCGCCTTGCGTATATATTTTGCCCATGG
TGAAAACGGGGCGAAGAAGTTGTCATTATTGCCACGTTTAATTCAACTGT
GAAACTCCCCCAGGATTGCTGAAACGAAAACCATTCCTCATAACCCTTAG
AAAGCCAGTTTTCCCCGTACACGCCCATCTTGCAATATGGTAAACTGCGA
ATCGTCTGAATCACTCAGGCGAGAACCGTTCACAGTGTCTCTCTTGAAAC
GGGTTATACACAGTGTCGACTA
UFO01535.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6171-RA | 1001 | CG6171-RA | 90..650 | 9..569 | 2805 | 100 | Plus |
| CG6171-RB | 947 | CG6171-RB | 90..645 | 9..564 | 2780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15363376..15363768 | 401..9 | 1965 | 100 | Minus |
| 3R | 32079331 | 3R | 15363147..15363319 | 569..397 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:13:48 has no hits.
UFO01535.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:32 Download gff for
UFO01535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6171-RA | 90..660 | 9..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:38:45 Download gff for
UFO01535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6171-RA | 164..734 | 9..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:34 Download gff for
UFO01535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6171-RA | 90..660 | 9..577 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:34 Download gff for
UFO01535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15363147..15363315 | 401..569 | 100 | <- | Minus |
| 3R | 15363377..15363768 | 9..400 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:32 Download gff for
UFO01535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11188869..11189037 | 401..569 | 100 | <- | Minus |
| arm_3R | 11189099..11189490 | 9..400 | 100 | | Minus |
