UFO01537.5prime Sequence
1199 bp (926 high quality bases) assembled on 2008-10-06
> UFO01537.5prime
CAGTCGACATGCTTGCTCACCTTCGACGCGTCGGATTGTCCCTGAACCGC
CAAATTCGGAGCCACATCGCATTCAATTCAAATGACAGAATGAGCAGCAC
CTGTGGCTTAGACACGGACATCGTGTGGATGGACTTGGAGATGACCGGGC
TGGACATTGAAAAGGACAAAATCCTCGAGGTGGCCTGCATCATTACGGAC
CAGGACCTGAACGTGAAGTCGGAGGGACCATGCTTTGCCATCAACCATCC
GCAGGAGGTCTACGACTCGATGAACGAGTGGTGCATGAAACATCATTACA
ATTCAGGTCTTATTGATCGATGCAAGAGCTCGGATGTGAATCTCGAAGAA
GCCTCCAATCTAGTGCTATCCTATCTCGAGAAGAACATACCAAAGCGCGC
CTGTCCGCTTGGTGGGAACTCCGTCTACACCGACCGACTATTCATTATGA
AATTCATGCCATTGGTAGATGCTTACCTGCATTACCGCATCGTCGATGTG
TCCACCATCAAGGAACTGGCCAAGCGATGGCATCCCGCAATTCTGGATTC
CGCTCCCAAAAAATCTTTCACGCATCGTAGTCTGGACGACATCCGAGAAA
GCATCAAAGAGCTTGCGTATTACAAAGCGAACTTATTTAAAGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCGGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGC
AGTACTGTTGTAATTCATTAAGCATTCTTGCCGACATGGAAGCCATCACA
AACCGGCATGATGAACCTGAATCCGCCGCGGCAATCAGCACCTTGTCGCC
TTGCGTTATAATATTTTGCCAATGATGAAACGGGGCGAAGAGTTTGTCAT
ATGGCCAGGTTTAATCAACCTGGGAACTCCACCAGGAATGGCTGAACCGA
AAACATATTCTCCATTAACCCTTAGGGAAATGGCAGTTACGGTACAGCCC
ATCTTGCAAATATTGTGTATACACCTGCCAGGAATCCGTCTGGATATTC
UFO01537.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10214-RA | 970 | CG10214-RA | 91..723 | 9..641 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23766766..23767398 | 641..9 | 3165 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:12:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 1376..1429 | 375..429 | 110 | 69.1 | Plus |
UFO01537.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:03 Download gff for
UFO01537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10214-RA | 82..729 | 1..649 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:07 Download gff for
UFO01537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10214-RA | 46..693 | 1..649 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:48 Download gff for
UFO01537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10214-RA | 82..729 | 1..649 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:48 Download gff for
UFO01537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23766760..23767407 | 1..649 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:03 Download gff for
UFO01537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19592482..19593129 | 1..649 | 98 | | Minus |
