UFO01538.5prime Sequence
1202 bp (1007 high quality bases) assembled on 2008-10-06
> UFO01538.5prime
CAGTCGACATGTGGTCTAGGCTTATTCAAATATTTCGACCCCTCAGAAGT
TTTCGAATGTCGCACTCACCGCCGCCGGCTAGCAATTGCGAGGAGGCTCT
CATCCAGCTGAAAAACTTTGGATATGCATTCGATGGAGAAGGAGTGCTGC
GCAAAGTCGATCCCGCCACTGGGGAGCCTGGCAAGGAACTCTTTTCCTAC
AACGTCAGCGACGACGCCGCCGAAAACGAGAAGCACTACCAGAAGCTAGC
CAACCAAATCCCAGAAATTGTCTACGCTTTGCTGGAGAAAAACGGTCTTA
GTCGCACCTACATCCCTTTTGACCAGCCTCCAGAGCGGTCTTCGTTTGTA
TTCTCGCAACCGGCAAAGCTGTCGCAGTCCAAAAAGTTGCTAGTCCTCAT
CCATGGCAGTGGATACGTTAAAGCCGGACAGTGGGCCAGAAGTTTAATTA
TTAACAATTCCTTGGACCACGGTACCCAGCTGCCTTATGTGCGACAGGCC
CAAAAACTGGGATACGATCTCCTCATCACCAATGCCAACGATTGCACACG
ATTCTACAATGGTAAGGAGAATCCCATCAAGGGCGTCAATACGTCCGTAG
AGCACGTTAAATATGTGTGGAAGAATATTGTATTGCCCGCGAAACCCGAG
AGTGTGGCCATTGTGGCCCACAGTTATGGTGGCAGTCTTACTCTTGATTT
GGTGGAGCGGTTTCCGGATTTCTTTAAAGAATCCGTTTTTGCCATTGCCT
TCACTGATGCCGCCATGGGAAGTCCCCAAGCGAAGAACAAGGAGTACCTG
TGCGATGTGGCCTGCGATTGGGTTGCCAGCAACACACCCTTAGACACACC
CGTTTCACAGTCAAAGAGCAGCATCCGGAGGATTTCCGCTGGCCACACTA
AGCACGAATGGACCTCTTACTCGGCCATCGATTCCGTGTTCAAGTTCATT
GAGGAAAGTATGAACAGCGAGCGAATAAGAAGGCAAGCTTTCTAGACATC
GGTTGGCGCGGCGGGCCCAGGTAGGTGTCAATCATATCATATCATAATCA
AAATCAAACTAGGCTAGGGAGATCTGGGCTATGACTAGTGCCTGGATTCC
ACAATAAACGCCCGGGCGGCACCGGAAGCTCGAACATCAATGGATCTGAG
CTATATGGATCATCCGGAGATCCAGGCCGAAGCTCGTATACTCAACTATT
GA
UFO01538.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10038-RA | 1212 | CG10038-RA | 142..1116 | 9..982 | 4850 | 99.9 | Plus |
| CG10038-RB | 1134 | CG10038-RB | 102..1038 | 47..982 | 4660 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12349083..12349375 | 982..691 | 1385 | 99 | Minus |
| 3R | 32079331 | 3R | 12349418..12349682 | 705..441 | 1325 | 100 | Minus |
| 3R | 32079331 | 3R | 12349795..12349982 | 442..255 | 940 | 100 | Minus |
| 3R | 32079331 | 3R | 12350374..12350503 | 138..9 | 650 | 100 | Minus |
| 3R | 32079331 | 3R | 12350195..12350312 | 254..137 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:48:58 has no hits.
UFO01538.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:15 Download gff for
UFO01538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10038-RA | 104..1088 | 3..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:08 Download gff for
UFO01538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10038-RA | 104..1088 | 3..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:58 Download gff for
UFO01538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10038-RA | 139..1123 | 3..988 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:58 Download gff for
UFO01538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12350374..12350506 | 3..138 | 97 | | Minus |
| 3R | 12349083..12349364 | 702..982 | 99 | <- | Minus |
| 3R | 12349422..12349680 | 443..701 | 100 | <- | Minus |
| 3R | 12349795..12349982 | 255..442 | 100 | <- | Minus |
| 3R | 12350195..12350310 | 139..254 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:15 Download gff for
UFO01538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8174805..8175086 | 702..982 | 99 | <- | Minus |
| arm_3R | 8175917..8176032 | 139..254 | 100 | <- | Minus |
| arm_3R | 8176096..8176228 | 3..138 | 97 | | Minus |
| arm_3R | 8175144..8175402 | 443..701 | 100 | <- | Minus |
| arm_3R | 8175517..8175704 | 255..442 | 100 | <- | Minus |
