UFO01539.5prime Sequence
1166 bp (923 high quality bases) assembled on 2008-10-06
> UFO01539.5prime
CAGTCGACATGAAGCAGTTCGTTGTTCTAATGTGCCTGGTGGCCCTCACA
GCAACAGCTCCTCAGGGATACAAGTACCAACCTCAGCTGCCAGCCCTTCC
CATTGGCAATCTTCGTCCTCTGACACCCATTTCGTCAAGTGGAATATACG
CAAGTGGCGCCGTCCCATCTTTCCCACAGGCCGGTGCTCAGCCCGCGATC
GGTGTCCAGCCAGCCATTCAAGCCGTGCAGACCATCGTTGCCGCTCCTGC
TCCCGCCCCCGCTCCCGCTCCTTTGTCGATCTCACTCCCAAAGGAGACTT
TCCTTACTGCTTCGCCCCAGCAAAACCTGATCAGCACTGTGCAGCAGCAG
CCTCAGCAAATCGTGTACCAGCAGCAACCGCAGCAAGCCCTTCAGACCCA
GTTCGTCCAGCGCCCCGCTATCGTTACCAAGGACATTTACATCCACTCCG
CCCCCGAGGAGAATGAGGAACTGCGGCAGGACGAGCCACTTCTGGAGAAT
GTGCCCATCCGCAAGAACTACCGGATCGTCTTCATTAAAGCGCCTTCCCA
GAATCTGAAATATACCGCCGCGGCCCTGAAGCGGGCCCAGTCAAGCAACG
AGGAAAAGACCGTCATCTACGTGCTCTCTAAAAAGCCCGATCTCACTGAG
ATCCAGCAGCAGCTGCAGGTTACCCAGTCTGAGGCCAAGGTTCAAAAGCC
GGAGGTCTACTTCATTAAGTACAAGACCCAGGAAGAGGCCCAGCGCGCCC
AGCAGAAATCCAGGCCCAGTACGACGCCCTGGGAGGTGCAACCCACATTT
CGGACGAGGGAGTGGCTCCCATCGCCAGCGTTTCGAGTGGCTCCCTTAAC
CTGGGCAGCTTGTGCCCCAGCACTCCCAAGCTGGGCCAACCATCATCCAC
TCTCAGCGCAACCATATCCAAGCCACAGGTCAGCCCATTGTCAGCTGCAG
TCATTACCAGGGGGTTCAGGGGGTCCAGCAGCAGAGCCTCTTTGTGAAAA
GTCAACCTCCTCATTCGCTCCTCGGGCCATCAGGAGTATGTGCCGGCAAG
ACTTGCAGCTTCTGAACATCGTGGGCCCGTCCAGGTAATGCCAAATCTAA
TCTAATCAATAATTCAACTAGCCTAAGGATCCTGATAGAATAGGGCCTGA
TTCTCACAAATAAAAA
UFO01539.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlF-RA | 1235 | CG14639-RA | 42..1101 | 9..1054 | 4785 | 97.7 | Plus |
| TwdlV-RA | 1067 | CG14640-RA | 556..644 | 696..783 | 255 | 86.5 | Plus |
| TwdlY-RA | 1034 | CG32570-RA | 616..707 | 696..786 | 210 | 82.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4247143..4248141 | 32..1021 | 4375 | 97.5 | Plus |
| 3R | 32079331 | 3R | 4255322..4255410 | 696..783 | 230 | 86.5 | Plus |
| X | 23542271 | X | 16735562..16735653 | 696..786 | 185 | 82.6 | Plus |
Blast to na_te.dros performed 2014-11-28 20:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-C | 11124 | TART-C TARTC 11124bp | 9163..9225 | 325..385 | 130 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2393 | 341..386 | 113 | 71.7 | Plus |
UFO01539.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:51 Download gff for
UFO01539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlF-RA | 34..1101 | 1..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:08 Download gff for
UFO01539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlF-RA | 32..1099 | 1..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:09 Download gff for
UFO01539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlF-RA | 34..1101 | 1..1054 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:09 Download gff for
UFO01539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4247144..4248173 | 33..1049 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:51 Download gff for
UFO01539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 72866..73895 | 33..1049 | 97 | == | Plus |
