UFO01540.5prime Sequence
1198 bp (1023 high quality bases) assembled on 2008-10-06
> UFO01540.5prime
CAGTCGACATGAACATCCGCTGCGCAAAACCGGAAGACCTAATGACCATG
CAGCACTGCAATCTGCTGTGTCTACCCGAAAACTACCAGATGAAGTACTA
CTTTTACCACGGACTAACCTGGCCTCAGCTTAGCTACGTGGCCGTTGACG
ACAAGGGCGCCATTGTGGGCTATGTCCTGGCCAAGATGGAGGAGCCGGAG
CCCAATGAGGAGAGCCGCCATGGGCACATCACCTCGCTAGCGGTCAAGCG
TTCCTATCGGCGATTGGGCCTGGCCCAGAAGCTCATGAATCAGGCCTCCC
AGGCCATGGTCGAGTGCTTCAATGCCCAGTACGTGTCCCTGCACGTGAGG
AAGAGCAATCGGGCTGCCCTGAACCTCTACACCAACGCCCTCAAGTTCAA
GATCATCGAGGTGGAGCCCAAGTACTATGCCGATGGCGAGGATGCATATG
CCATGCGACGCGACCTCAGCGAGTTTGCCGATGAGGATCAGGCCAAGGCT
GCGAAGCAGTCAGGCGAGGAGGAGGAGAAGGCGGTCCACAGATCCGGCGG
ACATGGCCACTCGCACAACCACAGCGGTCACGATGGCCATTGTTGCGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAAT
CATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTC
ATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGA
GCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATC
AACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACT
CATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCA
TCACAAACGGCATGATGAACCTGATCGCCAGCGGCATCAGCACCTTGTCG
CTTGCGTATATATTTGCCCATGGTGAAACGGGGGCGAAGAAGTTGTCCAT
ATTGGCACGTTTAATCAAAACTGGTGAACTCACCCAGGGATGCCTGAAAG
AAAACTATTCTCATACCCTTAGAAATAGCCAGTTCACCCGTACCGCCCAT
CTGCATATTGTGTAGAACCTGCCGATCGTCTGATTCCTCCAAGAGCGTGT
AAACGTTCATTGTTCTCATGGAACACGTGATATCATCAAGGGGTACTC
UFO01540.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vnc-RB | 1016 | CG11989-RB | 268..856 | 8..596 | 2945 | 100 | Plus |
| vnc-RC | 1137 | CG11989-RC | 389..977 | 8..596 | 2945 | 100 | Plus |
| vnc-RD | 1176 | CG11989-RD | 428..1016 | 8..596 | 2945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9973275..9973863 | 8..596 | 2945 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:48:25 has no hits.
UFO01540.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:38 Download gff for
UFO01540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vnc-RD | 419..1016 | 1..596 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:09 Download gff for
UFO01540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ard1-RD | 409..1006 | 1..596 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:52 Download gff for
UFO01540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vnc-RD | 419..1016 | 1..596 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:52 Download gff for
UFO01540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9973266..9973863 | 1..596 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:38 Download gff for
UFO01540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9966366..9966963 | 1..596 | 99 | == | Plus |
