UFO01543.5prime Sequence
1204 bp (1027 high quality bases) assembled on 2008-10-06
> UFO01543.5prime
CAGTCGACATGTTTAAACTGGCCCGTATGCTCCTGCCGCAGCAGCGGATC
CTGGCCAGCCCGCTGCGCCTGCAACGCCTGATCTCTACCAGCGACGAGGT
CAACGCAGAGCCCATCATCAAGTCCATGGACACCATTGGCGGCCTCCCCA
CCGAACTGGTCAACGAACAGAAGCTGAAGAAGACTAGCAGAACCTTATCG
ACGCTCCAAAATCACTCGGTTCCCATTGCCGCTCGCGTCACGGTGTCGAA
AGATGAGAGTCGCGACTTTATGGCCGTGTTCCCAGATCTTGTGCGTGACA
TCACCACCGTGACGAAGGCATACAATTGCAGCGACGCAGCCAAATGGTTC
GCCCAAGTCCTCCAGTACAATGTGCCCAGGGGCAAGAAGAACCGCGGCAT
CCTCACCGTGCTCACGTATAAGAATCTAGTGCCCACCCAGGATCTTACGC
CGGAGAACATAAAGCTCGCCCAGTATCTGGGCTGGTGCGTGGAAATGCTC
CAAAGTTTTTTCATCATCTCAGACGATGTGATGGACAACAGCACCACCAG
ACGCGGCCAACCCTGCTGGCACAAGGTGGAGAACGTGGGCCTGACTGCCA
TTAACGATGCTCTTATGATTGAAAACGCCATGTATGCCATTCTCAAGAAG
CACTTCAGCCACTTGGACTGCTATGTCGCCCTAATGGAGCTCTTCCACGA
AATCACATACATCACTACCTGCGGACAATCGTTGGACCAACTGAACTCGA
ACCGCTGTGTCTCGGAATTCACAATGGAAAACTACAAAGCAATTGTCGAA
AATAAGACTGCCTATTACTCCTTCTACCTTCCATTCGCACTTGCTTTGCA
CTTGGCTGGCTATAAAGACGCAGAGGCCTTCCGTCAATCGAAGACCATTC
TCCTAGAAATGGGCACTTTTTCCAGGTTCAAGATGATTTTCTCGACTGCT
TCGGTAATCCGGAGTGACTGGTAAATTGGAACCGACATTCAGGACACAGT
GCTCGTGGCTGGCTGTGGTGGCTATGCAGCGAGCATGTCGAGCAAAGCAA
ATCATGGTCGATTGCTATGGCAAGAAGACCAGCTAAGGTGGAAGGAGGGA
AGACTGTACAGGACTGGACTGCCTTCACATGCATTCCAGGAGAATCCTAC
ACAGGAATAATGCACATTATCAACAAACTCTACGCGGGGGTGTGTCCCTC
ACGC
UFO01543.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fpps-RA | 1465 | CG12389-RA | 87..1216 | 9..1123 | 5165 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11306159..11306521 | 859..497 | 1815 | 100 | Minus |
| 2R | 25286936 | 2R | 11306580..11306794 | 497..283 | 1060 | 99.5 | Minus |
| 2R | 25286936 | 2R | 11307261..11307442 | 190..9 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 11305877..11306099 | 1073..859 | 725 | 94.6 | Minus |
| 2R | 25286936 | 2R | 11306865..11306962 | 285..188 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:38:40 has no hits.
UFO01543.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:22 Download gff for
UFO01543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fpps-RA | 87..1185 | 9..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:10 Download gff for
UFO01543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fpps-RA | 124..1222 | 9..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:35 Download gff for
UFO01543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fpps-RA | 87..1185 | 9..1097 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:35 Download gff for
UFO01543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11305877..11306098 | 860..1073 | 95 | <- | Minus |
| 2R | 11306159..11306520 | 498..859 | 100 | <- | Minus |
| 2R | 11306580..11306791 | 286..497 | 99 | <- | Minus |
| 2R | 11306865..11306959 | 191..285 | 100 | <- | Minus |
| 2R | 11307261..11307442 | 9..190 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:22 Download gff for
UFO01543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7193382..7193603 | 860..1073 | 95 | <- | Minus |
| arm_2R | 7193664..7194025 | 498..859 | 100 | <- | Minus |
| arm_2R | 7194085..7194296 | 286..497 | 99 | <- | Minus |
| arm_2R | 7194370..7194464 | 191..285 | 100 | <- | Minus |
| arm_2R | 7194766..7194947 | 9..190 | 100 | | Minus |
