UFO01544.5prime Sequence
1196 bp (1018 high quality bases) assembled on 2008-10-06
> UFO01544.5prime
CAGTCGACATGTCTGATCCAGGAAGCGCCGGCTACAACATAACCAAGGAT
CCGGCCCTGGCAAAGAGTCGAATCTTCTTGGGCAACCTGCCGGTTTGCAC
GCGCGAGGAGCTGGTGAGCATTTGCCAGCCATATGGCAAAGTGCTCGGTT
CGATGGTCCAGAAGAACTACGGATTCGTGCAGTTTGAAACGGAGGAGCTG
GCCAATAAAGCCGCCTCCGCCCTGCACAAGTCCACTTTTAAGCAAAACAT
GCTCACCGTACGCAACGCCAGCATTAAATCGAAGGCGGCCAATGCTATCG
CCAAAAGAAATTCAAATCAAGGAGGCCAGGTGACAGTTCAGGGTGGACTT
GTGATGTCAGCGGCGGCAGCGGCAGCAGGTCAACCCCTCATCAATGATTG
CGAGATCATAGTCCAAAATCGCGAGAATACCAAATACGCAGAATACATTG
AGGAGCGGCTAAAGAATTCCAGTCTGCGCGTGGATGTACTCTTTCCCAAC
GAGGACGTCTTGCTAGGCAAGGTCCTGGCCAACATCTCTTCGCGCGGCTG
CTTGTATGCGGTATTGGTCACGCCGCAGCACGAGGAACACAACAGCATCA
CAGTAAACATTTTGTATGGCGTACCCGCTGAGCATCGCAACATGCCGCTG
GAGGACGCCATCACCCTGATCTCCACCGATTTTAGGCTCAAAAAACAGCG
CGACGCTGTCGTCTTACCGCCGTCAACATCCATACACAAGGGACAGCGAC
GACATCCCCAGGAAATGCAGGGGCTGCTGGAAAGGCTGGCAGACAATCAT
CCATTGACCGCGTCGCAGTACGAGGTGATTCTTAAGTACCTCGAAGCGAA
CGCGAGGAGCAACTGAAGCGAGAGGGGGGCGAGGCCAATGCTCTGGCCAA
GCTAAAAGCTCCCGATCCAGAGATCGGAGCTGCAGAAAGAAGAATTCTTA
GCATCATGAACAGCCCGGCAGTAACCGATGTCACCAGCGGAGCTCATGTA
TCCCACTTTCGAGGCAGTCAGGAGGACAGAAGCTATGGAGCTACTGCTGA
CGATCGAGTGGTGGCGGCCTGAAGGGTTTACACTCGGAACCAGAACGAAT
TTTAGCCGAGTTTACAAGCTTCAGAACATTCGTTGGGCCGCGTCAGCTAA
TGGCCTAATCAAATCCTAATCCTAATCTAATCACACACATAGCCCA
UFO01544.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Neos-RB | 1260 | CG8614-RB | 59..1166 | 9..1111 | 5080 | 97.9 | Plus |
| Neos-RA | 1449 | CG8614-RA | 248..1355 | 9..1111 | 5080 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7242360..7242999 | 431..1069 | 2715 | 97.7 | Plus |
| 3L | 28110227 | 3L | 7241875..7242296 | 9..430 | 2110 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:28:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 1768..1832 | 250..315 | 111 | 65.2 | Plus |
UFO01544.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:52 Download gff for
UFO01544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neos-RA | 245..1355 | 4..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:21 Download gff for
UFO01544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neos-RA | 181..1291 | 4..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:53 Download gff for
UFO01544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neos-RA | 245..1355 | 4..1111 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:53 Download gff for
UFO01544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7241872..7242296 | 4..430 | 99 | -> | Plus |
| 3L | 7242360..7242999 | 431..1069 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:52 Download gff for
UFO01544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7234972..7235396 | 4..430 | 99 | -> | Plus |
| arm_3L | 7235460..7236099 | 431..1069 | 97 | == | Plus |
