UFO01545.5prime Sequence
1193 bp (984 high quality bases) assembled on 2008-10-06
> UFO01545.5prime
CAGTCGACATGGTGAGCCTGCTGCAAGAGATCGACACCGAGCACGAGGAC
ATGGTCCACCACGCAGCGCTGGACTTCTACGGCCTACTGTTGGCCACCTG
CTCCTCGGACGGCAGCGTCCGCATCTTTCACTCGCGCAAAAACAATAAGG
CGCTCGCCGAGCTCAAGGGACACCAGGGACCAGTGTGGCAGGTGGCCTGG
GCACATCCCAAGTTTGGCAACATACTGGCATCGTGCTCCTACGACCGCAA
GGTGATCGTCTGGAAGTCCACAACGCCCCGGGATTGGACTAAGCTCTACG
AATACAGCAACCACGACTCCTCGGTAAACTCGGTGGACTTCGCGCCATCC
GAGTACGGATTGGTGTTGGCCTGCGCCAGTTCGGATGGCTCGGTATCGGT
GCTCACCTGCAACACGGAGTACGGTGTGTGGGATGCCAAGAAGATACCGA
ATGCGCACACGATCGGAGTGAATGCCATCTCGTGGTGCCCCGCCCAGGCA
CCAGATCCAGCATTTGACCAGCGCGTAACTTCGCGTTCGGCGGCCGTAAA
GCGCCTAGTGAGCGGTGGTTGCGATAATTTAGTGAAGATTTGGCGGGAGG
ACAACGACCGCTGGGTGGAGGAGCACCGACTGGAGGCGCACTCGGATTGG
GTGCGCGACGTGGCCTGGGCGCCGTCGATCGGATTGCCCCGCTCGCAGAT
TGCCACGGCTTCGCAGGATCGCCATGTGATTGTGTGGAGCAGCAACGCAG
ATCTATCCGAGTGGACCTCGACTGTGCTGCACACATTCGACGATGCCGTG
TGAGCATCTCGTGATCAACCACCGGCAACATTCTTGCCGTCACCGGTGGG
GACAACAATGTCACATTGTGAAGGAGACACGGAGGGCCAATGATCCGCAT
CAACTACGAGTCGGTACGCCATCAGTCGAAGCAGCCCTCGCACTTTCGCA
TTCCCACTCCCAGCAGCAGCAGGCGCTACAACAGCACATCAACAAGGCGC
AATCGCATCCAGGTCTTCTTCGGATTCGGAGCATAGCTCGACTGTCACTC
GCAGCTTTCACCAAGCCTTTCTAGACATCGTTTGGGCGCGGTCAGTAGGG
TCTATCATACTCTATTCATATCTTATCAACTGCCTAGGATCTGCATGACA
TGCTGATTCCCACAATAAAGCGCGGGCGACACCGAACGTCTCG
UFO01545.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec13-RB | 1809 | CG6773-RB | 389..1449 | 9..1056 | 4865 | 98 | Plus |
| Sec13-RA | 1343 | CG6773-RA | 104..1164 | 9..1056 | 4865 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23357398..23358152 | 296..1041 | 3160 | 97.4 | Plus |
| 3R | 32079331 | 3R | 23356666..23356952 | 9..295 | 1435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:53:36 has no hits.
UFO01545.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:22 Download gff for
UFO01545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec13-RA | 96..1167 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:23 Download gff for
UFO01545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec13-RA | 91..1162 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:20 Download gff for
UFO01545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec13-RA | 96..1167 | 1..1059 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:20 Download gff for
UFO01545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23356658..23356952 | 1..295 | 98 | -> | Plus |
| 3R | 23357398..23358152 | 296..1041 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:22 Download gff for
UFO01545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19182380..19182674 | 1..295 | 98 | -> | Plus |
| arm_3R | 19183120..19183874 | 296..1041 | 97 | == | Plus |
