UFO01546.5prime Sequence
1196 bp (1013 high quality bases) assembled on 2008-10-06
> UFO01546.5prime
CAGTCGACATGGCACTTTGGGTGGATAAATACCGTCCGCGGGAGCTGTCC
AAATTGGACTTCCACAAGGATCAAGCGGAGAACCTACGCAACCTTTGCAA
GCAGAGCGATTTTCCTCATCTGATGTTCTACGGACCCTCGGGTGCTGGCA
AGAAGACACGCATCATGTGCCTGCTACGGGAGATGTACGGATCCGGCGTT
GAGCGGTTGAGGAGCGAGACCATGACATTCACCACGCCATCCAATCGGAA
GGTAGAGGTGATGACGGTCAGCAGCAACTACCACTTGGAGGTGAATCCCT
CCGACGCTGGCATGTACGACCGCACGGTGGTGATCGATCTCATCAAGCAG
GTGGCCCAGACGCATCAAATTGAGATTAGTGGCCAACGGGAATTCAAGGT
GATTGTAATTTCGGAGGGCGACGAACTCACCAAGGATGCCCAGCACGCCC
TGCGCCGTACGATGGAGAAATATGTGGCCACGTGCCGGATAATCATATCG
GTGAACTCCACATCTCGGATCATTCCGGCCATACGGTCGCGTTGCCTGGG
CATACGGGTGGCGGCTCCCAACGAAACGGAGATCGTGTCCATCTTGCAGA
ACACTTGCAAGCGGGAGGGACTCGCACTGCCCGTGGAGCTGGCCAAACGG
GTTGTGGACAAGTCGGAGCGCAATCTCAGGCGAGCACTTTTGATGCTGGA
GGCCGCCAAGGTGGCCAAGGCGCCGTTTACCGCCAATCACGAGATTCCCG
ACCTGCACTGGCAGGTGTTCCTGCGTGAGACAGCATCTCAGATTATCAGT
GAGCAAACGCCTGCCAAACTGGAGAAGATCCGCGAACGCCTGTACGAGCT
ACTCACGCAAGGCGTTCCACCTAATCTCATATTCCGCGGCCTGTCGAACA
GCTGGTTAACAATTGTGATATGTCCATCAAGGCAAAGACGCTCGAGTCGC
CACCGAGTACGAGCACCGGATGCAGTCCGGCGCCAAGCACATTTTTCATC
TTGAAGCGTTCGTCCCCTCAGTTTATGACATCTATAAAAAGTTCCTTTCT
GGGCTGACATGACGATGATTTGCAGCTTTCTAGAACATTCGTTGGGCGCG
GTCCAAGTATGGTCAAAATCTATCAATCTAATCTATCCACTAGGCTAGGG
AATCTGGCATAGACAGGGCCTGGATTCTCCACCAATAAAAAAGGTC
UFO01546.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RfC38-RB | 1604 | CG6258-RB | 471..1541 | 5..1071 | 5135 | 99 | Plus |
| RfC38-RA | 1276 | CG6258-RA | 143..1213 | 5..1071 | 5135 | 99 | Plus |
| Nup160-RA | 4747 | CG4738-RA | 4407..4747 | 1071..735 | 1500 | 97.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11129012..11130003 | 1056..67 | 4705 | 99.2 | Minus |
| 2L | 23513712 | 2L | 11130111..11130175 | 69..5 | 310 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:48:14 has no hits.
UFO01546.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:29 Download gff for
UFO01546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC38-RA | 140..1213 | 1..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:05 Download gff for
UFO01546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC38-RA | 468..1541 | 1..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:43 Download gff for
UFO01546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC38-RA | 140..1213 | 1..1071 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:43 Download gff for
UFO01546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11130112..11130176 | 1..68 | 94 | | Minus |
| 2L | 11128995..11130001 | 69..1073 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:29 Download gff for
UFO01546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11130112..11130176 | 1..68 | 94 | | Minus |
| arm_2L | 11128995..11130001 | 69..1073 | 98 | <- | Minus |
