UFO01548.5prime Sequence
1152 bp (994 high quality bases) assembled on 2008-10-06
> UFO01548.5prime
CAGTCGACATGTCGCAGCAACCTGTTGCCTTTTTAACCCGTCGCGAAACT
TTCAGCGCCTGCCATCGTCTCCATAGTCCCCAATTGAGCGACGCCGAGAA
TCTGGAAGTCTTCGGCAAGTGCAACAATTTCCACGGCCACGGACACAACT
ATACAGTTGAGATAACCGTCCGTGGTCCCATCGATCGGCGAACCGGAATG
GTGCTAAACATCACCGAGCTGAAAGAGGCTATAGAAACTGTGATTATGAA
GCGCCTGGACCACAAGAATCTCGATAAGGATGTCGAATACTTTGCCAATA
CACCAAGCACCACAGAAAACTTGGCCGTTTACATCTGGGACAACATCCGT
CTGCAGCTGAAGAAGCCGGAGCTGCTGTACGAGGTGAAGATCCATGAGAC
CCCAAAGAACATTATCAGCTACCGCGGCCCGTATCCGCTCAATGGCATCT
ACAACCCCATCAACAAACGCATCGCTCACGATTCGTGCACCAACATCTCG
TCGGATTCGGATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTAC
GCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCT
GCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCG
GCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAACGGG
GCGAAGAGTTGTCCATATTGCCACGTTTAAATCAACTGTGAACTCACCCA
GGGATGCTGAACGAAAACATATCTCATAACCCTTTAGGAATAGCCAGGTT
CACCGTACACGCCCCATCTGCGAATATATGTGTAGAACTGCGAAATCGGT
CTGCATTCACTCGACGATGAACGTCAGTTGGCTCATGTAACGGTACAGGT
AACCATCCTTCCAGCTACGCTTTCATGCATATTCGAAATTTCCGGGATGT
GA
UFO01548.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pr-RC | 1073 | CG16784-RC | 370..873 | 9..512 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20073919..20074128 | 512..303 | 1050 | 100 | Minus |
| 2L | 23513712 | 2L | 20074191..20074339 | 302..154 | 745 | 100 | Minus |
| 2L | 23513712 | 2L | 20074771..20074852 | 156..75 | 410 | 100 | Minus |
| 2L | 23513712 | 2L | 20074958..20075025 | 76..9 | 340 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:20:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BS | 5142 | BS BS 5142bp | 2465..2510 | 914..870 | 110 | 73.9 | Minus |
UFO01548.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:41 Download gff for
UFO01548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-RC | 362..882 | 1..522 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:05 Download gff for
UFO01548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-RC | 383..903 | 1..522 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:36 Download gff for
UFO01548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-RC | 362..882 | 1..522 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:36 Download gff for
UFO01548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20073919..20074128 | 303..512 | 100 | <- | Minus |
| 2L | 20074191..20074336 | 157..302 | 100 | <- | Minus |
| 2L | 20074771..20074850 | 77..156 | 100 | <- | Minus |
| 2L | 20074958..20075031 | 1..76 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:41 Download gff for
UFO01548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20074958..20075031 | 1..76 | 94 | | Minus |
| arm_2L | 20073919..20074128 | 303..512 | 100 | <- | Minus |
| arm_2L | 20074191..20074336 | 157..302 | 100 | <- | Minus |
| arm_2L | 20074771..20074850 | 77..156 | 100 | <- | Minus |
