UFO01549.5prime Sequence
1185 bp (952 high quality bases) assembled on 2008-10-06
> UFO01549.5prime
CAGTCGACATGACGGGGGAAGAACGGGAAGATAAAGCAGCTGAGAATTGC
CAGGCATTGTGGAAATTTTTTAAACTTCCCAATCAAATGAATAGTGATCT
GAAGGAGAGTGGTTCCGGAGCCAGAAAAGACGACGCCGCACCGGCAGCCG
GCGATTTCGTCGCCGCTAGCGGATTCGCTCCCAATCGTTGGGTCAAACTG
AACGTGGGTGGACAAATCTACGCCACTACCATCGACACTCTGGTGGGCAG
AGAACCGGATTCAATGCTTGCTAGGATGTTCCTGCAAAATGGCAGCATGA
AGCCCAGCGAGCGTGACGAGCAGGGAGCATACCTGATTGATCGAAGTCCT
CGATATTTCGAGCCGATCATCAACTACCTCCGCCACGGACAATTCGTATG
CGATTCGAACATCAGTGTGTTGGGTGTTTTGGAGGAGGCGCGGTTCTTCG
GAATCTTTTCGCTTGTCACCCATTTGGAGGAACGCCTGGGACAGCAGGAG
ACGCCGCTGGGGGACAGACCATTGACGCGCAACGACGTCATCAAGGCCAT
CATTCAGACCTCCGTGATAACGGAGCTGCGCTTTCAAGGCGTTAATCTGT
CTGGGGCCGATCTACGAAAGCTAGATTTTCGCAACATTAACTTCAAGTAT
GCCAACATGTCTCACTGCAATTTGTCCCACACCAATCTTAACTACTGCTG
TCTTGAACGGGCGGATCTTCAGTACGCAAACTTGGAATGTGCCCAACTAG
TGTCAGTGCGGGGACTTTGCGCCAATATGGAAGGTGCAAACTTGCGTGGG
TGTAATTTTGAAGACCCAACAGGAGTTCGAACTAATCTAGAGGGTGTTAA
CCTCAAAGGAGCATGTTTGGAAAGCAGCACATGGCCGGTGTTAACTTACG
GTGTGGCAAATTTGAAGACGCCATATGAAGAACTGTTAATTTGGCGAGCT
GCGTGTTAGCAGGTGCCGACTTGAAAAATGCATCTTCTGGCACGACTGCA
GAGCAATTTGGTGGGGCAATTTAAGGACGCGGAGCTTACCTAATGGTGAC
CATGCACATGTCAAGCCATCAGCAGCTTTCTAGACATCGTTGGCGCCGGC
AGTAGGTGCTAACTAATCTAATCTATCGATATCACATAGCTAGGAATCTG
GCCTAGACCATAGGCGCTTGTGAATTCTCTACCCA
UFO01549.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14647-RB | 1178 | CG14647-RB | 1..1061 | 19..1063 | 4780 | 97.9 | Plus |
| CG9853-RB | 1818 | CG9853-RB | 128..306 | 1063..901 | 415 | 89 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4400500..4401138 | 9..647 | 3195 | 100 | Plus |
| 3R | 32079331 | 3R | 4401352..4401486 | 646..780 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 4401600..4401800 | 779..978 | 660 | 95.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:20:42 has no hits.
UFO01549.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:48 Download gff for
UFO01549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14647-RB | 1..1069 | 19..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:28 Download gff for
UFO01549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14647-RB | 4..1089 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:45 Download gff for
UFO01549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14647-RB | 1..1069 | 19..1069 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:45 Download gff for
UFO01549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4400493..4401138 | 1..647 | 99 | -> | Plus |
| 3R | 4401354..4401485 | 648..779 | 100 | -> | Plus |
| 3R | 4401601..4401908 | 780..1069 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:48 Download gff for
UFO01549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 226215..226860 | 1..647 | 99 | -> | Plus |
| arm_3R | 227076..227207 | 648..779 | 100 | -> | Plus |
| arm_3R | 227323..227630 | 780..1069 | 92 | | Plus |
