UFO01550.5prime Sequence
1204 bp (984 high quality bases) assembled on 2008-10-06
> UFO01550.5prime
CAGTCGACATGGCTGTACCGAACGTTAAATTCAACAACGGCAAGGAAGTC
CCAATCATTGGACTGGGAACCTGGGGCAGCCCCAAGGGTCAGGTCACCGA
GGCTGTCAAAGTTGCCATTGATGCCGGATACAGGCACATTGACTGTGCCT
ATGTATACCAAAACGAGGATGAGGTCGGAGATGGTGTTGAGGCCAAGATC
AAGGAGGGCGTTGTCAAGCGTGAGGATCTGTTCATCACCAGCAAACTGTG
GAACACTTTCCATCGCCCGGATCTTGTCAAGTCGGCATTGGAGAACACAT
TGAGCTCCCTGAAGCTGAAGTACCTCGATCTGTACCTTATCCACTGGCCC
ATGGGCTACAAGGAGGGATGCGATCTGTTCCCCACCGACAAGGATGGCAA
GACGCTGTACTCGCCGGTTGATTACGTCGACACGTGGAAGGCCATGGAGA
AGTTGGTGGAAGAGGGTCTGGTCAAGTCCATTGGTGTTTCCAACTTCAAC
AGAAGGCAGATCGAGCGCGTGCTTGAGGTGGCCACTATTCCACCAGTAAC
CAATCAGATTGAGTGCCATCCATATCTGACCCAGAAGAAGCTGATTGACT
TCTGCAAGTCAAAGGACATTACAATCACTGCCTACAGTCCCTTGGGATCT
CCCAACCGCCCATGGGCCAAGGCTGGTGATCCGGTCATCCTAGAGGAGGC
TAAGATCAAGGAAATTGCCGCTAAGAAGAAGAAGACCCCTGGACAGATCC
TTATTCGATACCAGGTTCAGCGTGCCAACATTGTTATCCCCAAATCTGTG
ACCAAGGACCGCATCGAGTCCAACTTCCAGGTCTTCGACTTCGAACTGAC
ACCTGAGGAAATCGAAATTCATCGAAAGCTTCGAGTGCAACGGGCCGCCT
TGTTCCCCTACTCAACCAATACGGTCACCCTCACCACCCTTTCGAGAAGG
ACGAATACGCAGCTTTCTAAGACCATTCGTTTGGCGCGCCGGCCAGGTAG
TGTCATATTCATAATCATATCATATCATATCACAACTAGCCTAGGAATCC
TGTCATGACTAGTGCTTGATTCTCCACATAAAACGCCCGCGCAACGACGT
CTGAACAATCCGATGAAGTTCTGAGCATACTGTATCTATCACGAATCAGC
CGGCTCGATTCAAATAGCCCGCCCTGTCCCACTCTATGTCAGAAAGCGGT
GTGT
UFO01550.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6084-RA | 1135 | CG6084-RA | 100..1047 | 9..958 | 4700 | 99.8 | Plus |
| CG6084-RD | 1316 | CG6084-RD | 100..1004 | 9..915 | 4485 | 99.8 | Plus |
| CG6084-RC | 1172 | CG6084-RC | 206..1084 | 78..958 | 4355 | 99.8 | Plus |
| CG6084-RD | 1316 | CG6084-RD | 1186..1228 | 916..958 | 215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11621483..11621967 | 704..220 | 2425 | 100 | Minus |
| 3L | 28110227 | 3L | 11621214..11621424 | 915..703 | 965 | 99.1 | Minus |
| 3L | 28110227 | 3L | 11622033..11622175 | 220..78 | 715 | 100 | Minus |
| 3L | 28110227 | 3L | 11623548..11623616 | 77..9 | 345 | 100 | Minus |
| 3L | 28110227 | 3L | 11620623..11620665 | 958..916 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:12:27 has no hits.
UFO01550.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:09 Download gff for
UFO01550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6084-RA | 93..1050 | 1..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:29 Download gff for
UFO01550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6084-RA | 63..1020 | 1..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:55 Download gff for
UFO01550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6084-RA | 93..1050 | 1..962 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:55 Download gff for
UFO01550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11620620..11620665 | 916..962 | 95 | <- | Minus |
| 3L | 11621214..11621422 | 705..915 | 99 | <- | Minus |
| 3L | 11621483..11621966 | 221..704 | 100 | <- | Minus |
| 3L | 11622033..11622175 | 78..220 | 100 | <- | Minus |
| 3L | 11623548..11623622 | 1..77 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:09 Download gff for
UFO01550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11615133..11615275 | 78..220 | 100 | <- | Minus |
| arm_3L | 11616648..11616722 | 1..77 | 94 | | Minus |
| arm_3L | 11613720..11613765 | 916..962 | 95 | <- | Minus |
| arm_3L | 11614314..11614522 | 705..915 | 99 | <- | Minus |
| arm_3L | 11614583..11615066 | 221..704 | 100 | <- | Minus |
