UFO01552.5prime Sequence
1231 bp (1012 high quality bases) assembled on 2008-10-06
> UFO01552.5prime
CAGTCGACATGCTGCGCTCAAATTTCTTAAGATTGATGGCCCACGGGGCT
CCAAGTAGATTAATGTCCACCGCCACCAAGCTGACCACAGTGGAGATCAA
CGATAAGACAGGAATCGCTACTCTCACGATGAACCGGCCTCCGGTGAATA
GCCAAAATGTCCAGCTGCTTTTGGACCTGCAGACTTCCATTAGCGAAATT
GAGAACAATAAAAGTCGGGGTCTCATTTTAACCTCTGCCAGCTCCAATGT
GTTCTCAGCTGGCCTGGACATCTTTGAAATGTATAACACAGACGTGGAGC
GACTCCGAACCGTTTGGACCGAATTGCAGAATGTATGGATTGCCCTCTAT
GGAACAACTTTGCCCACGGCAGCAGCCATCAATGGCCACGCCCCCGCTGG
CGGTTGCCTGCTGGCCACTGCCTGTGAGTATCGAGTGATGCGGCCCAACT
TTTTGATTGGATTAAACGAAGCCCAACTAGGAATCATTGCACCCAAGTGG
CTAATGTCCGGCTTCGCTAGCATACTGCCCAAACGGGTGGCAGAGCGAGC
TCTCACCCAAGGACGTATGTTCACCACACAGGAGGCCTTTGAAGTTGGCC
TGATCGATGAGATCGCCAGCAGCAAGGAAGAGGCCTTGGAGAAGTGCGCT
GCCTTCATCGGCACCTTTGCTAAGGTCAATCCTTTGGCCCGCGGACTGAC
CAAGCTCCAGTTCCGTGGCGACAACATTAAGGAGTTTGAGATGATTCGCG
AGAAAGATATTGCTGACTTTGTAGCTCTAGCTTCTAGCCCGGGAGTGCAG
AAGGTTATGGGAGCTTATCTTGAAACCTAAAGAACAAGGTCAAGAAGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGGTCATAATC
ATATCATAATCATAATCATAATCACACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGATCTTCACCAATAAAAACGCCCGGCGGCACCGAGCGTTC
TGAACAATTCAGATGGAGTTCTGGAGGTCATTTACTGGATCTATCACAGG
ATCCAGCGAGCTGATATCCAATTACGCCCCGCCCTGCCACTCATCCGAGT
ACTGGTTGTAATCCTAAGCATTCGCGCGAACTTGGAGCATACCAAACGCT
AGTGTACTGGATGCCACGGAATCGACCCTGGCCCTGTGCTTATATATATT
GCCCTAGTGGGTAACGGTGGGCGAGAAATGG
UFO01552.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4594-RB | 1103 | CG4594-RB | 123..961 | 9..846 | 4170 | 99.9 | Plus |
| CG4594-RA | 1099 | CG4594-RA | 119..957 | 9..846 | 4170 | 99.9 | Plus |
| CG4598-RB | 1216 | CG4598-RB | 151..803 | 63..715 | 595 | 73.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9920854..9921317 | 384..846 | 2270 | 99.8 | Plus |
| 2L | 23513712 | 2L | 9920374..9920602 | 9..237 | 1145 | 100 | Plus |
| 2L | 23513712 | 2L | 9920654..9920801 | 237..384 | 740 | 100 | Plus |
| 2L | 23513712 | 2L | 9918935..9919101 | 63..229 | 325 | 79.6 | Plus |
| 2L | 23513712 | 2L | 9919379..9919707 | 387..715 | 265 | 72 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:21:09 has no hits.
UFO01552.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:55 Download gff for
UFO01552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4594-RA | 113..957 | 2..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:30 Download gff for
UFO01552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4594-RA | 18..862 | 2..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:59 Download gff for
UFO01552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4594-RA | 113..957 | 2..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:59 Download gff for
UFO01552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9920368..9920601 | 2..236 | 98 | -> | Plus |
| 2L | 9920654..9920800 | 237..383 | 100 | -> | Plus |
| 2L | 9920854..9921317 | 384..846 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:55 Download gff for
UFO01552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9920854..9921317 | 384..846 | 99 | == | Plus |
| arm_2L | 9920368..9920601 | 2..236 | 98 | -> | Plus |
| arm_2L | 9920654..9920800 | 237..383 | 100 | -> | Plus |
