UFO01553.5prime Sequence
1187 bp (979 high quality bases) assembled on 2008-10-06
> UFO01553.5prime
CAGTCGACATGCCACGCCCAGTTCTGCTCATTCACGGTGGAGCCGGTGAT
ATATCGGACTCCAGGATAGCGGGCAAGTTCGCGGGCATTAAGCAGGCACT
GCGCTCCGCCTGGGGGCTACTGAGTCCGGACAATGGCAGCGGCGGAGGCA
GTGCCCTGGATGCCGTAGAGGCGGCGGTGCGCAGCATGGAGCTGGACGAG
AACTTCAACGCCGGCTACGGCTCCTGCCTGAACACCAGTGGCCAGGTGGA
GCTAGAGGCCAGTTTAATGGAGGGCCGCGACTTGCGAGCCGGCTGCATAA
CCCTGCTGCGGGATGTGATGCACCCGATTACAGTGGCGCGTCGCCTGATG
GAGAAGCAGCGACACACCTTTCTTGGCGGCGCAGCGGCCCAGGAGCTGGC
ACTAGCCACGGGCAGCGAACGACTGCAGCCGGGAGCACTGGTCACCGAGG
GGGCTCGCTTAACGCTGAAGGAATTCGAGGATCAGGTGGCCCAGGGCAAG
GATCCCTTCTTCGCGCGCACCGAACTGACCGATGACAAGCCGGTGCCGAA
AACGGATCCCAGTGGCGAAACAGTCGGAGCGGTTGCCATGGACGCATCGG
GCCAAATAGTGGTGGGCACCTCCACCGGCGGCATCACCGGCAAGTGGCCG
GGTCGCATTGGGGACACACCCATTCTCGGCAGCGGCACCTATGCGGATAA
CTGCCGTGGAGGCGTCTCCACCACCGGACATGGCGAGACCCTCATGCGTT
ACAATCTGGCCCAGCGCATTCTGTCCGCCATGGAGTACCAGGGACTGTCC
GCCCAGGCAGCCGCCGACAAGGAGTGCCGCGAGATGACCAAACGGCTGGG
TGGCACTGGTTGCGCCATCGTGGTTGGCCACTCCGTGACCTGGGCATCAG
TTCACGTCGCGTCGCATGGCGTGGGGGATATGTCCAGGATGGCACATCTT
TACGCATCGAGGTCAGTGTGCACCAGGAACGTCACACTTTCAACGCAAGC
TTTCTAGACCATCGTTTGCCGCCGGCCAGGTATGGTCCAATCATAATCTT
ATCATATCAAATCACACTAAGCTAGGAGATCTGCTAGACATATGCTTGAA
TTTCTACAATAAAGCCTGGTCCAACAGACGCTTCTCGACATACCAAGTGA
TCTCGAAGCTATTCACTGGAACTTCTCTATCCTACCG
UFO01553.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7860-RB | 1204 | CG7860-RB | 75..1075 | 4..995 | 4690 | 98.6 | Plus |
| CG7860-RA | 1377 | CG7860-RA | 248..1248 | 4..995 | 4690 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15569240..15570182 | 4..945 | 4540 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:28:33 has no hits.
UFO01553.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:02 Download gff for
UFO01553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7860-RA | 246..1218 | 1..970 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:31 Download gff for
UFO01553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7860-RA | 246..1218 | 1..970 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:01 Download gff for
UFO01553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7860-RA | 246..1218 | 1..970 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:01 Download gff for
UFO01553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15569238..15570210 | 1..970 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:02 Download gff for
UFO01553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15463271..15464243 | 1..970 | 98 | == | Plus |
