UFO01554.5prime Sequence
1188 bp (1015 high quality bases) assembled on 2008-10-06
> UFO01554.5prime
CAGTCGACATGCAGCGATTCCAAGTGTGCAGCGTCCTGATCCTGGCCTGG
ATTGCCTGTGGACATGCCCTGGCCGTGGGATCCCCGGAGTGCCCCGAGAA
GTACGGCGTGCAGGCGTACGCCCACACGGAGAACTGCGACCAGTTCTTCC
TCTGCACCAACGGCACCCTGACCCTGGAGACCTGCGAGAACGGACTGCTC
TTCGATGGCAAGGGCGCGGTGCACAACCACTGCAACTACAACTGGGCGGT
GGACTGCAAGGGCCGCCAGTGGGATCCCACTCCCATTTCCACGCCGGCCT
GCGAGTACCAGTTCGGTCTGTACGCTGTCTCCAAGGACTGCTCCACCACC
TACATCAAGTGCGCCCACGGTGAGCCGCACGAGCAGGACTGCGACGCCGG
GTTGGCCTACGACGAAAGGATCCATGGCTGCAACTGGCCGGATCAGCTGC
TGGAGCACTGCAATCCCGAGGCGGTCGTTGGCTTCAAGTGCCCCACCAAG
GTGGACCCCAACTCGGTGGCCGCTCGCTTCTGGCCCTTCCCCCGGTTCCC
CGTCGCCGGCGACTGCCACCGCCTGATCACTTGCGTGGAGGGCCATCCGC
GCCTGATCAGCTGCGGCGAGGACAAGGTCTTCGACGAGCACACGCTGACC
TGCGAGGACCCGGAGTACGCCAGCGGCAGCTGTGCCAACTACGGCAAGGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGTCATTACTGGATCTATC
AACAGGAGTCCAGGCGAGCTCGATATCAATTACGCCCCGCCCTGCCCCTC
ATCGCAGTACTGTGTATTCATTAAGCATTCTGCCGACATGTAGCCATCAC
AAACGCATGATGACCTGATCGCAGGCGCATCAGCACCCTGTCGCTGGCGT
AATATATTGCCCATGTGAAACGGGGGCGGAGAGTGTCCATATGGCCACGG
TTATCAACCTGTCCCACCAGGATGCTGACGAAACATTTCCTATACCTTAG
AAATAGTCAGGTTTCCCCCGTAAAGCGGCTCACATCCT
UFO01554.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Peritrophin-A-RB | 1348 | CG17058-RB | 235..926 | 7..698 | 3460 | 100 | Plus |
| Peritrophin-A-RA | 1238 | CG17058-RA | 125..816 | 7..698 | 3460 | 100 | Plus |
| Peritrophin-A-RC | 1406 | CG17058-RC | 125..589 | 7..471 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20247548..20247775 | 471..698 | 1140 | 100 | Plus |
| X | 23542271 | X | 20246904..20247120 | 60..276 | 1085 | 100 | Plus |
| X | 23542271 | X | 20247192..20247386 | 277..471 | 975 | 100 | Plus |
| X | 23542271 | X | 20244881..20244935 | 7..61 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:58:45 has no hits.
UFO01554.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:52 Download gff for
UFO01554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Peritrophin-A-RA | 119..816 | 1..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:42 Download gff for
UFO01554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Peritrophin-A-RB | 223..920 | 1..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:47 Download gff for
UFO01554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Peritrophin-A-RA | 119..816 | 1..698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:47 Download gff for
UFO01554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20244875..20244934 | 1..60 | 93 | -> | Plus |
| X | 20246905..20247120 | 61..276 | 100 | -> | Plus |
| X | 20247192..20247386 | 277..471 | 100 | -> | Plus |
| X | 20247549..20247775 | 472..698 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:52 Download gff for
UFO01554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20118623..20118849 | 472..698 | 100 | == | Plus |
| arm_X | 20115949..20116008 | 1..60 | 93 | -> | Plus |
| arm_X | 20117979..20118194 | 61..276 | 100 | -> | Plus |
| arm_X | 20118266..20118460 | 277..471 | 100 | -> | Plus |
