UFO01555.5prime Sequence
1203 bp (927 high quality bases) assembled on 2008-10-06
> UFO01555.5prime
CAGTCGACATGTCGCTATCTACTCTGCTTTCGCTTGTGGATGAACTCCAG
GAGCCCCGCAGCCCCATCTACGAGCTTGGACTGGGATTGCATCCGCATTC
CCGCTACGTGCTGCCCCTTGGCACTCAGCAGCGCCGTTCCATCAACGGAT
GCCCTTGCGCATCGCCGATATGCCCATCGTCGCCCGCCGGCCAGGTTTTG
GCTTTGCGGCGCGAGATGGCCAACCGCAACGACATTCACTGGCCGGCAAC
CGCCCATGTGGGCAAGGATGGATTCCAGGTGTGCATGGACGTCGCCCAGT
TCAAGCCCAGTGAGCTCAACGTGAAGGTGGTGGACGACTCCATCTTGGTC
GAGGGCAAGCATGAGGAACGCCAGGACGACCATGGTCACATCATGCGCCA
CTTTGTGCGCCGCTACAAGGTTCCCGATGGCTACAAGGCGGAGCAAGTGG
TCTCGCAGCTGTCGTCGGATGGCGTGCTCACCGTCAGTATTCCCAAGCCG
CAGGCCGTCGAGGACAAGTCCAAGGAGCGCATCATTCAAATTCAGCAAGT
GGGACCCGCTCACCTCAACGTTAAGGCAAATGAAAGCGAGGTGAAGGGCA
AGGAGAACGGAGCACCCAACGGCAAGGACAAGGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGCCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCAATTACTGGATCTATCAACAGGAGTCCAA
GCGAGCTCGATATCAAATTACGCCCCCGCCCTGCCACTCATCCGCAGTAC
TGTTGTAATTCATTAGCATTCTGCCGAACAGGCAGCCATCACCAACCGGC
ATGATGAACCTGAAATCGCCAGCGCCATCAGCACCTTGTCGCCTTGCGTA
TAATATTGCCCATGTGAAAACGGGGCGAAGAAGTTGTCATATTTGGCCCA
CGTTTAATCAAAACTGGTGACTCATCTAGAATGCTGAAACGAAAAATATT
TTCCAATACCCTTAGGAAATGCCAGTTTACCGTACGCCACCTTGCATATA
TTGTGTGAAACTGGCGGAATCGCTTCTGGCTTTACCCTCCACAGCGCAGA
TGT
UFO01555.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp26-RB | 1010 | CG4183-RB | 240..863 | 9..632 | 3120 | 100 | Plus |
| Hsp26-RA | 958 | CG4183-RA | 188..811 | 9..632 | 3120 | 100 | Plus |
| Hsp23-RB | 884 | CG4463-RB | 318..630 | 264..576 | 350 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9376565..9377188 | 632..9 | 3120 | 100 | Minus |
| 3L | 28110227 | 3L | 9382199..9382511 | 264..576 | 335 | 73.8 | Plus |
| 3L | 28110227 | 3L | 9384438..9384590 | 258..410 | 330 | 81 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:08:07 has no hits.
UFO01555.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:27 Download gff for
UFO01555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp26-RA | 181..816 | 1..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:43 Download gff for
UFO01555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp26-RA | 233..868 | 1..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:04 Download gff for
UFO01555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp26-RA | 181..816 | 1..637 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:04 Download gff for
UFO01555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9376560..9377195 | 1..637 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:27 Download gff for
UFO01555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9369660..9370295 | 1..637 | 99 | | Minus |
