UFO01556.5prime Sequence
1223 bp (936 high quality bases) assembled on 2008-10-06
> UFO01556.5prime
CAGTCGACATGGTGCGTATGAACGTATTGGCCGATGCCCTGAAGTGCATA
AACAACGCCGAGAAGCGTGGCAAGCGGCAGGTGCTGCTGCGTCCCTGCTC
CAAGGTGATCATCAAGTTCCTGACCGTGATGATGAAGCATGGCTATATCG
GCGAATTCGAGATCGTCGAGGATCACCGTGCCGGCAAGATCGTTGTCAAC
CTGACCGGTCGGCTAAACAAGTGCGGCGTCATCTCGCCCCGCTTCGATGC
GCCCATCAACGACATCGAGAAGTGGACCAACAATCTGTTGCCCTCGCGTC
AGTTTGGTTACGTTGTGCTCACCACCTCTGGCGGCATCATGGACCACGAG
GAGGCTAGGAGAAAACATTTGGGAGGCAAAATTCTCGGCTTCTTCTTCGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG
TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAAGT
TGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCCAGGG
ATTGGCTGAGACGAAAAACATATTCTCATAAACCTTTAGGGAAATAGGCC
CAGGTTTTCACCGTAACACCGCCACATCTTGCGAATATATGTGTAGAAAC
TGCCGGAAATCGTCGTGTATTCACTCCAGAGCGATGAAAACGTTTTAGTT
TGCTCATGGAAACGGTGTAACAAGGGTGAACACTATCCAAATCACCAGCT
CACCGTCTTTCATGCCATACAAAATCCGATGAACATTATCAGCGGGCAGA
ATGTGATTAAGCCGGAATAACTTGTGCTTATTTTCTTACGGCCTAAAAGG
CGTAATCAGCGTGAACGGCTGTTAAGTAACTTGACCACGTGCACGGATGG
ACTCTCAAAGGTCCTCTATTCCC
UFO01556.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS15Ab-RA | 724 | CG12324-RA | 138..527 | 9..398 | 1950 | 100 | Plus |
| RpS15Aa-RF | 674 | CG2033-RF | 69..459 | 8..398 | 1850 | 98.2 | Plus |
| RpS15Aa-RE | 741 | CG2033-RE | 136..526 | 8..398 | 1850 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10821813..10822202 | 9..398 | 1950 | 100 | Plus |
| X | 23542271 | X | 13335988..13336378 | 398..8 | 1850 | 98.2 | Minus |
| 2L | 23513712 | 2L | 14747021..14747075 | 398..344 | 245 | 96.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:40:22 has no hits.
UFO01556.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:48 Download gff for
UFO01556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Ab-RA | 133..527 | 1..398 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:44 Download gff for
UFO01556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Ab-RA | 138..532 | 1..398 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:07 Download gff for
UFO01556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Ab-RA | 133..527 | 1..398 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:07 Download gff for
UFO01556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10821808..10822202 | 1..398 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:48 Download gff for
UFO01556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6709313..6709707 | 1..398 | 98 | == | Plus |
