UFO01558.5prime Sequence
1173 bp (973 high quality bases) assembled on 2008-10-06
> UFO01558.5prime
CATTCCACATGGTATTCTTCAAATCCCTCATCTGCCTGGCCGTCCTGAGC
GCCGCCTCCGCCGGACTCCTCCACGGACATGGTGCTGGTCTCTACGCCGC
CGCCCCGGCCATCTATGCCGGCCATGGTCACCACGACGAGGGAATCGATT
ACCATGCCTACCCCAAGTACCACTACAACTACGGAGTGGCTGACTCTCAC
ACCGGAGACGTGAAGTCGCAGCACGAAGTGCGTGATGGTGATGTCGTCAA
GGGATCCTACTCTCTGGTGGAGCCCGATGGTTCGGTGCGCACCGTGGAGT
ACACCGCCGATGACCACAATGGCTTCAACGCCGTCGTCCACAAGACCGGC
CCCACTGTGCACCACGCCGCTCCCGCTGTGGTTGCCCACGCCGCTCCCGC
CGTGGTCCATGCCGCTCCGGCCTATGCCCCAGCCATTGCCCACCATGTGG
CCGCCGCTCCCGCCGTGCCCTACGCCGGATCCCTGGCGCATCAGGTGCCC
GCCTACGGATACGCCACCCACAACGCTCACGCGCATGTGGCCCACTACGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAAACGGCATGATGAACCTGAATCGCCCGCGGCATCAGCACCTTG
TCGCCTTGCGTATAATAATTTGCCCATGGTGAAAACGGGGCAAAAGTTGT
CCTTATGGCCACGTTTAATCAAACTGGTGAACTCCACCCAGGAATGGCTT
GAGACGAAAAACTATTTCTCATAAAACCTTTAAGGGAATAGGCCAGTTTT
CCACCGGTAACACGCCAATTCTCTGCAATATTTTGGGTAAGAACCTGGCC
GAGAATCTCTGGTATCAACTCCAGAAAGAAGAGAAAAGCGCTCGACTTTG
CTCTCGTGGGAAAGACGGTGTAC
UFO01558.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr62Bc-RB | 1017 | CG1919-RB | 81..620 | 9..548 | 2670 | 99.6 | Plus |
| Cpr62Bc-RA | 1134 | CG1919-RA | 81..620 | 9..548 | 2670 | 99.6 | Plus |
| CG34461-RB | 1873 | CG34461-RB | 306..504 | 156..354 | 455 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1840795..1841187 | 548..156 | 1965 | 100 | Minus |
| 3L | 28110227 | 3L | 1841760..1841892 | 156..24 | 650 | 99.2 | Minus |
| 3L | 28110227 | 3L | 8337932..8338104 | 176..348 | 445 | 83.8 | Plus |
| 3L | 28110227 | 3L | 8326842..8326938 | 258..354 | 380 | 92.8 | Plus |
| 3L | 28110227 | 3L | 4211097..4211189 | 311..219 | 210 | 81.7 | Minus |
| 3L | 28110227 | 3L | 4216023..4216075 | 231..283 | 190 | 90.6 | Plus |
| 3L | 28110227 | 3L | 19520076..19520113 | 294..331 | 190 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fw3 | 3132 | Fw3 FW3 3132bp | 1966..2016 | 1104..1154 | 120 | 70.6 | Plus |
UFO01558.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:54 Download gff for
UFO01558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 75..624 | 1..553 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:24 Download gff for
UFO01558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 71..620 | 1..553 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:11 Download gff for
UFO01558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 75..624 | 1..553 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:11 Download gff for
UFO01558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1840795..1841187 | 156..548 | 100 | <- | Minus |
| 3L | 1841761..1841900 | 13..155 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:54 Download gff for
UFO01558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1840795..1841187 | 156..548 | 100 | <- | Minus |
| arm_3L | 1841761..1841900 | 13..155 | 95 | <- | Minus |
