UFO01559.5prime Sequence
1205 bp (907 high quality bases) assembled on 2008-10-06
> UFO01559.5prime
CAGTCGACATGGTGGTCACACACAACGTCAAGGGATACGATGAGTTCACC
AAAAAGATGGAGGAACTGGAGAACGGCGACGAGCCGGTCCACGTCCTCTT
CAGTGGCGGCAAGGACGAGAAAGGAGAGAGCTGGTGCCCCTACTGCGTCA
AGGCGGAGCCGGTGATACACGATGCGCTGAAGAAGGCCCCGGGCAACTCG
CACTTCGTGCATGTGGATGTGGGCGAGCGGGCATACTGGAAGGATTTGAA
CTGCCCCTTCCGCAAGGATCCCAACACGCATCTGATCTTCTTGCCCACTC
TGTTGCGCTGGAAGCGGCCACAGCGTCTGGATGGCGAGCGCTGCTCCAAT
CAGGATCTCGTCGAGATGATGTTCGAGGATGAGGATGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGG
CATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTA
TAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGC
CACGTTTAAATCAAAACTGGTGAACTCACCCAGGATTGGCTGAGACGAAA
AACATTTTCTCAATAAACCCTTTAAGGGAAAAAGGCCAGGTTTTCACCGT
AACACGCCACATCTTGCGAATATATGTGTAGAACTTGCCGGAAATCGTCG
TGTATTCAATCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGG
TGTAACAGGGGTGAACACTATCCCATATCACCAGCTCACGTCTTTCTATG
CATACGAAATTCGGGATGAGCATTCATCAGGCGGGCAGAGATGGTGAATA
AAGGCGATAAACTGTGGGCTATTTTTTCTTTACGTCTTAAAGGCGTAATT
CCACCTGTAACCGTCTTGTTAGGTTAACTGTGGATCAACGGACGTGGATA
AGCGC
UFO01559.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cl-RC | 674 | CG11024-RC | 200..578 | 8..386 | 1895 | 100 | Plus |
| cl-RB | 689 | CG11024-RB | 215..593 | 8..386 | 1895 | 100 | Plus |
| cl-RA | 615 | CG11024-RA | 141..519 | 8..386 | 1895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5521136..5521286 | 236..386 | 755 | 100 | Plus |
| 2L | 23513712 | 2L | 5520400..5520545 | 8..153 | 730 | 100 | Plus |
| 2L | 23513712 | 2L | 5520618..5520700 | 153..235 | 415 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:58:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 230..299 | 951..1019 | 140 | 68.6 | Plus |
UFO01559.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:50 Download gff for
UFO01559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cl-RA | 132..523 | 1..391 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:25 Download gff for
UFO01559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cl-RA | 134..525 | 1..391 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:46 Download gff for
UFO01559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cl-RA | 132..523 | 1..391 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:46 Download gff for
UFO01559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5520391..5520545 | 1..153 | 97 | -> | Plus |
| 2L | 5520619..5520700 | 154..235 | 100 | -> | Plus |
| 2L | 5521136..5521286 | 236..386 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:50 Download gff for
UFO01559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5520391..5520545 | 1..153 | 97 | -> | Plus |
| arm_2L | 5520619..5520700 | 154..235 | 100 | -> | Plus |
| arm_2L | 5521136..5521286 | 236..386 | 100 | == | Plus |
