UFO01560.5prime Sequence
1201 bp (982 high quality bases) assembled on 2008-10-06
> UFO01560.5prime
CAGTCGACCTGAATGGATCGCGTAAAATAAAGTCCATGAAGACGATTCGC
CTTGGCGACGTTCTATACGACGACCAAAAACGACTTCTAACGCTGTGCCG
CAGCTGCGAATGCCACTTTATGACGCTCCAATCGTTCCAACGCCACCTAG
CCGATTGCCCCGGAGTAAAATACATAGTAACGCCGATCGAACCGCTGGCA
TTTGATGATGCCAATCGGGAAACGAGACTGGTGAATGGCAGACAGGAGAT
TCACATCTACGACCTGGAGGCGGTTAAGAAGAACACCAACACGGCCATCG
ATTGGGAGGCAGAGCTGGAGGATCCACGCTGGTACACCAATCCCAAGCCC
ACCGTGCAGACCATACCAAAGACAAATTCCAAGGAAAATATAGTAAAGGA
GGATGTAGTGCCGCTCGCCAAGGAGCCTCAGGAACCGGAAGGGGTGCCTG
CGAAACGTCCGCGTAGCCCTCCCACCACCCGACGTACCATTCTGACCTCC
CAGCAGCAGCGCAGATCCCGTGCCTGCTTGACTTCCCCTCAACCGCCAGC
AGTAAAGATGAAAAAGGCCATCATTCTGGTGCCCACTGTGCTGGAAGATC
TGAAGCGATTGCAGGACACGGAGAAAAAGGAAAGGATTCCAGAGGCACCA
CCAGCTCCTGTACATCCTGTAAGGTCATTGCAATCTCGTGCTACCGGGAC
AACGCAGTCAACATCTCAATTGGTACCCATGAAATTTTCTCCTGCATCGA
AGCTTATTATACCAGTCTCTTCAAGGATATCTGAAGGTACCAGACCCTCC
CAAGACGCCCGAGAAACCAGTTCCTACCATAACAAGCAAATCCAACTCCT
CCATTGGATGGCACCCAGAAAATCCTAAACAACTCAGAGCATGCGGTGTG
GAGGTGAAGCGAGCAAGTACCCAATTGAATGCCACGACTGAGCTTAAATC
CAACCAAAAATCAGGAGACCTTGGACATCATGAAGAAACTGCCAATCCAG
GGCATCAGATTCCACCAAGTAAGAAAAATCGGGCAGCTTTCTAGAACATT
CGGTTGGGCCGGGGGGCCAGGTAGTGGGTCTTATCATATTCTTATCATAT
CCTAATTCAACCTAGGCTAAGGAATCTGGCTGAACATTGGCTTGATCTCA
CATAAAAACGCTCCGGGCGCAACCCGAAGCGTTTCTCGTACCAATATACT
C
UFO01560.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10265-RA | 1230 | CG10265-RA | 86..1101 | 10..1027 | 4830 | 98.7 | Plus |
| CG10265-RC | 1368 | CG10265-RC | 86..799 | 10..723 | 3570 | 100 | Plus |
| CG10265-RC | 1368 | CG10265-RC | 798..1048 | 775..1027 | 1005 | 94.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14992652..14993430 | 1027..247 | 3530 | 98 | Minus |
| 2R | 25286936 | 2R | 14993512..14993750 | 248..10 | 1195 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 21:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G6 | 2042 | G6 G6_DM 2042bp | 622..674 | 799..849 | 116 | 71.7 | Plus |
UFO01560.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:25 Download gff for
UFO01560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10265-RA | 86..1104 | 10..1031 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:26 Download gff for
UFO01560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10265-RB | 745..1763 | 10..1031 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:37 Download gff for
UFO01560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10265-RA | 86..1104 | 10..1031 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:37 Download gff for
UFO01560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14992649..14993428 | 249..1031 | 98 | <- | Minus |
| 2R | 14993512..14993750 | 10..248 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:25 Download gff for
UFO01560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10880154..10880933 | 249..1031 | 98 | <- | Minus |
| arm_2R | 10881017..10881255 | 10..248 | 100 | | Minus |
