UFO01561.5prime Sequence
1187 bp (989 high quality bases) assembled on 2008-10-06
> UFO01561.5prime
CAGTCGACATGCTGCGCAAAACGGCAACGATGGGAATCATGGCGGCGGTT
GCCGTTAAAGCGGCTCCCGAGCCCCAGAAACCAGCCTCCAGTGCGGCGGA
CTGCAGCCTGGTGTGCCGGCCCAGCGAGCTGCCCATCTACGGCAGCTTGC
GCAAGACAGAACCCAAGCCAGAACGGCATCCACCACAAGACTCTGTGCTG
CACAAGAACCTGGAGGCCGGAGTCCGCTATGTGCGCGAGGAGGTGCAGTC
TGGATATAAGGCAGTGGCCGATCAAGCCGGCATTGTCGGCCATTACGTGG
AAACCGCTAAGGCACACACCCAGTCCACCATCGACATGCTGAACGAGCCC
CAGAACTCCCTGCACCGCAGCGGAGCCATTGTGGTGGGCGGTCTGGCTGG
TTTCATCTTCGCCGCCCGTGGAGGCTTCATAAAGAAGGTGTTGTATTCGG
GCATCGGAGCAGGTGCAGTCGCCTCCATGTGCTACCCCCGCCAGGCGGAA
GAAAACTGCCGCGTGGTACTCTACGAGGGCCGTAAGATCTTCGCCGTGGC
CTACAACTTCATCAAGGGCGTAAAGCCAGGAGAGGATGTTCCCGTAGTGC
CCTTCCCTACCTCGCTGGAGGACCTTAAGTACATGGCCAGTGACCTGTAC
GATGAGGCAAAGGATCTAATCTTCCCCAAAAAGAAGGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCACAGGAGTCC
AAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCACCTCATCGCAGTAC
TGTGTAATTCATTAAGCATTCTGCCGACATGAAGCCATCACACGCATGAT
GACCTGAATCCGCCAGCGGCATCAGCACTTGTCGCCTTGCGTATAATATT
TGCCATGTGAAACGGGGCGAAGAAGTTGTCCATATTTGGCCAGTAATCAA
CTGTGAAACTCACCAGGAATGCTGAACGAAAACATTCCTCAATACACCTT
AGGATATGCCACGGGTTTCCACCGTAAACACGCGCAC
UFO01561.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5903-RC | 2392 | CG5903-RC | 277..959 | 4..686 | 3400 | 99.9 | Plus |
| CG5903-RB | 995 | CG5903-RB | 164..846 | 4..686 | 3400 | 99.9 | Plus |
| CG5903-RA | 1487 | CG5903-RA | 277..959 | 4..686 | 3400 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16145834..16146359 | 686..161 | 2630 | 100 | Minus |
| 3R | 32079331 | 3R | 16146423..16146579 | 160..4 | 770 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:58:20 has no hits.
UFO01561.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:04 Download gff for
UFO01561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5903-RA | 273..959 | 1..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:50 Download gff for
UFO01561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5903-RA | 273..959 | 1..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:47 Download gff for
UFO01561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5903-RA | 273..959 | 1..686 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:47 Download gff for
UFO01561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16145834..16146359 | 161..686 | 100 | <- | Minus |
| 3R | 16146423..16146581 | 1..160 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:04 Download gff for
UFO01561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11971556..11972081 | 161..686 | 100 | <- | Minus |
| arm_3R | 11972145..11972303 | 1..160 | 98 | | Minus |
