UFO01562.5prime Sequence
1191 bp (1011 high quality bases) assembled on 2008-10-06
> UFO01562.5prime
CAGTCGACATGCCGGAACCGCGCAGTCCGATGGCCAGTTTTGCCGAGTCG
GTGCTGAATGTCATCGATGGACCCATAACTTGGTTCCGTGAGAGCATTGT
GGAGCCGAACCAGCAGAAGCAGAATTGGTACCACCAGCGCTTCCGCCGCG
TTCCGACGATCGACCAGTGCTACACGGACGATGCCGTCTGCCGTTTCGAG
GCCGATCAGCAGTTCCGCCGGGATCGCATGGTCGACAACGAGATTGTCAA
CATTCTGCGCCAGCGCTTCGAGGACTGCACCCTCTACGAGGCACCCGATC
ACATGGTCAAGTGCAGGCCGCTGATGGATCAGTACGAGAAGGCCACCGAG
AACTGGTTCATCAAGTATGGCGACTTGGGAGGTTATGCCAATGCCAAGAC
CGCGTACATGAAGCAGAAGCATCGTCTGATCTGGGAGCGTCGCCACGGAC
CAGTGGGCAGTGGCATGAAGGAGGAGGCCGCCCACGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGC
TTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAAC
AAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCC
AAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTAC
TGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGC
ATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTAT
AATATTTGCCCATGGTGAAAACCGGGGCGAAGAGTTGTCCATATTGGCCA
CGTTTAAATCAAAACTGGTGAACCTCACCCAGGGATTGGCTGAAACGAAA
AACATATTCTCATTAAACCCTTTAGGAATAGGCAGGTTTCACCGTAACAC
GCCACATTCTTGCAATATATGGTGTAGAAACTGCGGAAATCGTCGTTGTA
TTCACCCCAGAGCGATGAACGTTCAGTTGCTCTATGAACGTGTACAAGGG
TGAACCTTATCCCATATTCACAGCCTACGCTCATTGCATCGATCGGGATG
GACTTCTCAGGGGCAAGATGTAATAAGGCCGCGATTATACC
UFO01562.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdsw-RB | 738 | CG8844-RB | 179..654 | 9..484 | 2320 | 99.2 | Plus |
| Pdsw-RA | 651 | CG8844-RA | 92..567 | 9..484 | 2320 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3466786..3467062 | 90..366 | 1385 | 100 | Plus |
| 2L | 23513712 | 2L | 3467133..3467250 | 367..484 | 530 | 96.6 | Plus |
| 2L | 23513712 | 2L | 3466335..3466416 | 9..90 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:12:41 has no hits.
UFO01562.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:13 Download gff for
UFO01562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdsw-RA | 86..574 | 1..492 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:52 Download gff for
UFO01562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdsw-RA | 81..569 | 1..492 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:03 Download gff for
UFO01562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdsw-RA | 86..574 | 1..492 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:03 Download gff for
UFO01562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3466329..3466416 | 1..90 | 95 | -> | Plus |
| 2L | 3466787..3467062 | 91..366 | 100 | -> | Plus |
| 2L | 3467133..3467250 | 367..484 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:13 Download gff for
UFO01562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3466329..3466416 | 1..90 | 95 | -> | Plus |
| arm_2L | 3466787..3467062 | 91..366 | 100 | -> | Plus |
| arm_2L | 3467133..3467250 | 367..484 | 96 | == | Plus |
