UFO01567.5prime Sequence
1211 bp (1005 high quality bases) assembled on 2008-10-06
> UFO01567.5prime
CAGTCGACATGTCACGGCTAGCTTTATTGCGCAATTTGGTCACTCAGCGG
CAAAATTTGTTGCCCACCAACTTTGCCAGGTTAAAATGTGCGGCGGCGAT
GCACTGGAGTCCACATTTGCGACAGGAAGCGTCGCGCGATGGCGGCGGAT
CCCTTCAAAGATCGCAGGATAACACCCAGGTGTCGACGGATGTGCGCCCC
ATTGGCGAGAAGATCAAGGAGAACACCAAGACGGCCAGTTATACGGCGAT
TATAATCGCCGGATTAGGGGTGACCTGCGTGATGTTCTTTGCCATATTCC
GAGAGCTATTCTCCAGCGAAAGCCCGAACAATATATACGCGGACGCGTTA
AGACGTGTGGTCGAAGATCCGCGGGTACAGGATGCAATTGGTGCGCCCAT
CAAGGGATTCGGCGAGACATCCAGGCGCGGTCGCAGACAGCATGTGGCGC
ACTCGAGCTACGAGCGCAATGGAAAGCCCCACATGCGGATGCAGTTTTAT
GTGCAGGGCTTGAGGAACAAGGCCACCGTGCAGCTGGAGTCCAGAAGGAG
TGACTCTGGTAAACTGGAGTATCGTTATCTGTTCGTGCAATTGGATCACT
ATCCCCGCACCACCATCATCCTTGAGGACAACCGTGCATTTGACCCCACC
CCCGAGCCAGCGTCCGCTGGATCTTCCTTTGGCAACCTAGCCCTGATGTC
CAATAGCCGGGATAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGATTCTCACCAATAAAA
AACGCCCGGCGGCACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTC
TGCCGACATGAGGCATCACAAACGGCATGATGAACCTGAATCGCAAGCGC
ATCAAGCACCTTTGTCGCCTTGCGTATATTATTTGCCATGGGTGAAACGG
GGGCGAAGAGTTGTCCATATTGGCAGTTAATCAACCTTGGACTTCACCAG
GATGCCTGAACGAAAACATATTTCCTATATACCTTTAAGGAAATGGCGCA
GGGTTTACCGC
UFO01567.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7382-RA | 888 | CG7382-RA | 85..792 | 9..716 | 3480 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5519212..5519622 | 548..138 | 1995 | 99 | Minus |
| 2L | 23513712 | 2L | 5518989..5519157 | 716..548 | 845 | 100 | Minus |
| 2L | 23513712 | 2L | 5519683..5519812 | 138..9 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:08:10 has no hits.
UFO01567.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:29 Download gff for
UFO01567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7382-RA | 77..797 | 1..722 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:40:07 Download gff for
UFO01567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7382-RA | 70..790 | 1..722 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:05 Download gff for
UFO01567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7382-RA | 77..797 | 1..722 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:05 Download gff for
UFO01567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5519683..5519820 | 1..138 | 97 | | Minus |
| 2L | 5518984..5519156 | 549..722 | 98 | <- | Minus |
| 2L | 5519212..5519621 | 139..548 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:29 Download gff for
UFO01567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5519683..5519820 | 1..138 | 97 | | Minus |
| arm_2L | 5518984..5519156 | 549..722 | 98 | <- | Minus |
| arm_2L | 5519212..5519621 | 139..548 | 99 | <- | Minus |
