UFO01568.5prime Sequence
1179 bp (997 high quality bases) assembled on 2008-10-06
> UFO01568.5prime
CAGTCGACATGGCCTCCATTGACGAGGGCTCGCGCGTTGAGCGGAGATTC
TGCGCAGTCGGCAACCACACGCTGCGGAAGCCGTATCGCCAACTGAACAA
CAAATATTTGGTGCGCTTCGCCTGTTTGCTGAACAGCGAAATTCGGGCGG
GCAACCTCATCTGCTGCAAGTGCTACACGGACCTGGTGCGACTCTACCGG
AAGAAGAACGACAATGCCAAACGGCACAAGATGGCCAGGGAGACTGCCGC
GAGCATTACGGACGTCAGCGGCAGTCAGTCATCGTCGCACCAAAGTGCGC
CCTCTTTGCATGTCTCTGGCCAAAGTTCCGAATTCGGTGCCTCATACAGT
GAGGGGGGCATTGTGACTCCCGATGAAGAGCTGTGCTCCCACAGAAGCTT
AAGTCAAGATTCAGACAATGTGCCTACTACCAGCGCTGCAGCGATCCAAA
AACGCCAGCTTGCGAGGGCAAACCTAATGGTGAAACCATCGCAGAGGCTG
AGCTTGGCCCAGACTACTCCGGATTGTGACGACTACGACCCCAACTCGAA
TCTCAGTTTGAACGCCGTGAATGGCACGCGACTGCCGCACATTCAGCCGA
TTCCAAAGAGGCGCCCGACCGTCCTGGACAAGCAGTCCATGGATATTTAC
TTGATGGGAACCACAGGTGGTGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAATTACGCCCCGCCCTGCCACCTCATCGCAGTACTGTGTAATCATTAA
GCATTCTGCCGACATGGAAGCCATCAAAACGGCATGATGAACCTGATCGC
AGCGGCATCAGCACTTGTCCGCCTGCGTATATTTTGCCCATGTGAACGGG
GGCCAGAGTGTCCATATGCCACGTTAAATCAAACTGTGACTCACCCAGGA
TGCCTGAAACGAAACATTCCATAAGCCGAAGGAAAGCCAGTTCACCGATA
CAGCCCATCTTTGTGCCAATTATGTGTTG
UFO01568.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HipHop-RB | 1183 | CG6874-RB | 137..799 | 9..671 | 3285 | 99.7 | Plus |
| HipHop-RA | 1124 | CG6874-RA | 78..740 | 9..671 | 3285 | 99.7 | Plus |
| ms(3)K81-RA | 711 | CG14251-RA | 513..597 | 531..615 | 200 | 82.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18821307..18821969 | 9..671 | 3285 | 99.7 | Plus |
| 3R | 32079331 | 3R | 26876364..26876448 | 531..615 | 200 | 82.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:48:36 has no hits.
UFO01568.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:46 Download gff for
UFO01568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HipHop-RA | 74..740 | 1..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:40:08 Download gff for
UFO01568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo26-RB | 34..705 | 1..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:59 Download gff for
UFO01568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HipHop-RA | 74..740 | 1..671 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:59 Download gff for
UFO01568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18821298..18821968 | 1..672 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:46 Download gff for
UFO01568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18814398..18815068 | 1..672 | 98 | <- | Plus |
