UFO01569.5prime Sequence
1187 bp (977 high quality bases) assembled on 2008-10-06
> UFO01569.5prime
CAGTCGACATGGCAGCGATTTTACGTAAAACCCTAATTCTTGCGGGAAGC
CTGCATAGGAGTTTTGCCTCCGCCGCCAAGGCCGCAAAAGCAAAGCCCGT
CAAAACCAGCACCATTTCAGCTGTCGGCGAGTCCATCGCCGCCAAGGGCT
TCTTGCGTCCCCATAAGCCGTACTCCCCACCTGCAGATGCCGCCGAACGT
ATTCGAACCGTAGCCGCCTCGCTTCAACTGAAATCCGACCAGTTGGGGAA
TCTCTCCGAGAAATTCGAATTCCTGAACGCGTGCTTCCAGGAGCTGCAGC
ACGGAGTGCCCAACTCCCAGGTACATGAACTGCGCACCGTCAGCGATGTT
ATCGCTTTCTACCAAACAGCTGTGGACACCACCGTGCCGTTTGATGCACT
GAAGCGCATCGAGCTGCCGGAGAATTTGCACATCCAGTACGAGTACGTGC
GATTCCATCCCGAGACAGATACCAAATTCGACGGCAAAACGGCTTTCCCC
AAGAGCTCCACCCTAGTCACCGGTCTCAAGTACCGTGGAAAGTACGAGGG
ACACGAAGCCAAGCGATCCTGGCCTGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTC
ATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCT
GAATCGCCAGCGGCATCAGCACCTTGTCGCTTGCGTATAATTATTTGCCC
ATGATGAAACGGGGGCGAAGAAGTGTCCATATGGCCACGTTTAAATCAAA
CTGTGAACTCACCCAGGGATTGCCTGAACGAAAACATATCCTCATAACCC
TTAGGGAATAGCAGTTTCACCGGTACACCGCCACAATCTTGCCAATTATT
GGTAAACTGCGAAATCGTCGGATACTCGAGCGATAACGTTCATGGCTATG
AACCGGGTACAAGGGTAACACATATCCCACATATACA
UFO01569.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL50-RA | 739 | CG8612-RA | 45..611 | 9..575 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7243208..7243635 | 575..148 | 2140 | 100 | Minus |
| 3L | 28110227 | 3L | 7243694..7243803 | 148..39 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:58:26 has no hits.
UFO01569.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:09 Download gff for
UFO01569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL50-RA | 39..611 | 1..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:40:10 Download gff for
UFO01569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL50-RA | 38..610 | 1..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:51 Download gff for
UFO01569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL50-RA | 39..611 | 1..575 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:51 Download gff for
UFO01569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7243208..7243634 | 149..575 | 100 | <- | Minus |
| 3L | 7243694..7243803 | 39..148 | 100 | <- | Minus |
| 3L | 7243860..7243895 | 1..38 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:09 Download gff for
UFO01569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7236308..7236734 | 149..575 | 100 | <- | Minus |
| arm_3L | 7236794..7236903 | 39..148 | 100 | <- | Minus |
| arm_3L | 7236960..7236995 | 1..38 | 92 | | Minus |
