UFO01570.5prime Sequence
1224 bp (962 high quality bases) assembled on 2008-10-06
> UFO01570.5prime
CAGTCGACATGCTCTGCGAGGATCAGCACATGTCCGTGGAGAACACACCG
CAGAAAGGCTCCGGCAGCCTGAATTCCTCAGCATCCTCCATTTCGATCGA
TGTGAAGCCCACCATGCAGAGCTGGGCCCAGGAGGTCCGCGCGGAGTTTG
GCCACAGTGACGAGGCCTCCAGTTCCTTGAATAGCAGCGCTGCCAGCTGC
GGTTCCTTGGCCAAAAAGGAGACAGCCGACGGTAATCTGGAGTCCAAAGA
TGGCGAGGGCCGGGAGATGGCATTTGAGTTCCTGGATGGCGTCAACGAGG
TAAAGTTCGAGCGCCTGGTCAAGGAGGAGAAGCTAAAAACGCCCTACAAG
CGCCGACACTCGTTCACGCCGCCCAGCAACGAGAACAGTCGCTCCAACAG
TCCAAACAGCAGCAACTCCTCGGCCAACGGAGATGCAGCTGCGCCCAAAG
GCGGCAACAATCCCCATTCGAGGAACTCAAAAAAGTCTGGCAACTTCCGC
GCCCACAAGGAGGAGAAACGGGTGCGCCACAACAGCTACACGTCCTCCAC
CTCATCGTCATCCTCCTACACCGAAGCCGATCCCGCCATCCTAAGTCGCA
GGCAGAAGCAAATAGATTACGGAAAGAATACTGCCGCCTACGAGCGCTAT
GTGGAATGGTGCCAAAGGACGAGCGGACTCGCGATCATCCGCGCACCCCG
AACAAGTATGGAAAGTACAGCCGCCGCGCCTTCGATGGGCTCGTGAAGAT
CTGGCGCAAAAGCCTCCACATCTATGATCCACCTACACAAGCGCGCGACA
CGGCCAAGGACAGTAATTCCGACTCGGATTCTGACGCAAGCTTTTCTAGA
TCATCGTTTGGGCGCGGCGGGCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTTCACCAATAAAACCGCCGGGGGCAACCGAGCGTTCTGAAC
AAATCCAGATGGGAGTCTTGAGGTCATTACCTGGATTCTTTCAACAGGAT
TCCAGCGGCCTCGATATTCAATTACGCCCCGCCCTGCACCTCACTGCGAG
GTACTGTTTGAATTCATTAAGCAATCTGCCCGCAAATGAAAGCCATCCAA
CGCTGTAGTAATCTGGAATCGCCAAGCGGTCATCAGACACCGTTGTGCTG
CCCTGCTCCTTATAAATTACTTGC
UFO01570.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slbp-RA | 1132 | CG11886-RA | 126..955 | 7..835 | 4125 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29152251..29152924 | 835..163 | 3320 | 99.9 | Minus |
| 3R | 32079331 | 3R | 29152983..29153141 | 165..7 | 795 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:28:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2811..3033 | 374..612 | 151 | 57.8 | Plus |
UFO01570.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:07 Download gff for
UFO01570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slbp-RA | 122..955 | 1..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:47 Download gff for
UFO01570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slbp-RA | 103..936 | 1..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:08 Download gff for
UFO01570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slbp-RA | 122..955 | 1..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:08 Download gff for
UFO01570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29152251..29152922 | 165..835 | 99 | <- | Minus |
| 3R | 29152984..29153145 | 1..164 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:07 Download gff for
UFO01570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24977973..24978644 | 165..835 | 99 | <- | Minus |
| arm_3R | 24978706..24978867 | 1..164 | 98 | | Minus |
