UFO01571.5prime Sequence
1195 bp (967 high quality bases) assembled on 2008-10-06
> UFO01571.5prime
CAGTCGACATGTTGGCCTCTCGCTTGAATCTCCTGTTGCCCCGCGTATCC
TGGCTGCGCGGTTGCTCAACGACAGCGGTGGGCCAGAAACATCAGCGCCA
GGTGCCCACGGAGTTCGCCGTACACGATCCTCTGCAGGCTCACGCTCTAA
AGGAACAGTGCATCCTGGTTGACGCCAACGACCAAGCCATTGGGGCCGCC
TCTAAGGCAGACTGCCACCGTGTGCATCCAGAGACGAATGATGTTAAGCT
CCATCGCGCCTTCAGTGTTTTTCTCTTCAATTCTCAGGGAGAGATGCTAG
TGCAGAAGCGATCGTCTCACAAGATAACCTTCCCAAACACCTACACCAAC
GCGTGCTGCAGCCATCCGCTTTACGAAATCGAACAGGAACGTCAGGAGCG
CAACGCACAGGGCATCCGTGTGGCCGCTCAACGACGTCTCAACTACGAAC
TGGGCATTCCCACAGAGGAACTGCAGCCACAGGACTTTCGCTACCTGACC
CGCATCCACTACGCAGACACGGGCGACGGCGTGTGGGGCGAGCACGAGAT
AGACTACATCCTGTTCCTGCAAAAAGACGTGACGCTGCGTCCAAATAGCA
ACGAGGTCAGTGAGGTGCGCTACTTGCGCCGCGATAAGATCGACGAGGCG
GTGGCGAAGTTTAGTGCCCCGCTGACACCCTGGTTCTCTCTGATTCTGCA
GCATCGATTGAAACTCTGGTGGGACAATTTGCACCAGCTGGAGCAATTTG
AGGACTTGAGTAATATTCAGCGCTTTGCAAGCTTTCTAGACCATTCGTTT
GGGGGGGGGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCATAAAAACGCCCGGCGGCACCGAGCGTTCTGAACAATTCAGATGG
AGTTCTGGAGGTCATTACTGGATTTATCAACAGGGTTCAGCGGAGCTCGA
TATTCAATTACGCCCCGCCTTGCCACTCATCGCGAGTACTGGTTGGTAAT
TCATTAGGCATTCTGGCGACTTGAGGCCATTCAAAACCGGCAGTGAGTGA
CTGAATCGCCACGGATATCGGACACCTTGGGCCTGGCTAAATTGGCCCAT
TGGAACCGGGGGCAAGATGTCTCTCTATATGGGCGCAGGTTTTAG
UFO01571.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5919-RB | 898 | CG5919-RB | 91..858 | 9..776 | 3840 | 100 | Plus |
| CG5919-RA | 1227 | CG5919-RA | 91..858 | 9..776 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21270585..21271039 | 322..776 | 2275 | 100 | Plus |
| 3R | 32079331 | 3R | 21270216..21270530 | 9..323 | 1575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:25:21 has no hits.
UFO01571.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:08 Download gff for
UFO01571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5919-RA | 91..869 | 9..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:39:48 Download gff for
UFO01571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5919-RA | 80..858 | 9..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:46 Download gff for
UFO01571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5919-RA | 91..869 | 9..788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:46 Download gff for
UFO01571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21270216..21270530 | 9..323 | 100 | -> | Plus |
| 3R | 21270587..21271050 | 324..788 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:08 Download gff for
UFO01571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17095938..17096252 | 9..323 | 100 | -> | Plus |
| arm_3R | 17096309..17096772 | 324..788 | 98 | == | Plus |
