UFO01578.5prime Sequence
1187 bp (989 high quality bases) assembled on 2008-10-06
> UFO01578.5prime
CAGTCGACATGGTTATCAACTTCGCCGCCGGTCCAGCCAAGTTGCCCGAA
GAGGTACTGAAAGAGGTGCAGGAAAATCTTGTCAACTGCAATGGCAGCGG
CATCTCGGTCATGGAGATGTCCCATCGCTCCAGCAACTATGCCAAGATCC
ATGATGCGACCATCAGCGATCTTCGCGAACTCCTCAATGTGCCCAGTAAC
TACAAGATTCTGCTGATGCAGGGCGGTGGCACCGGACAGTTCGCTGCAGT
GGCTCTGAACTTGATTGGCAAGACTGGCACTGCTGATTATGTAATCACCG
GCTCCTGGTCGGCCAAGGCGGCCAAGGAGGCGGCTCAGTACGGCACTGTG
AACGCGGTGCTGCCCAAGTTGGCAAAGTATACAACTGTTCCACGACAGGA
GACCTGGAAGCTGGACCCAAATGCCTCATATGTCTACTACTGCGACAATG
AGACCGTAGAGGGCGTGGAGTTCGACTTTGTGCCCGAGGTTCCAGCCGGT
GTGCCACTGGTGGCCGATATGTCCTCCAATTTTCTGTCGCGTCCCTTCGA
TGTCTCCAAGTTTGGCGTTATCTATGCGGGAGCCCAGAAGAATATCGGAC
CAGCGGGCACCACGGTGATCATTGTCAGGGACGATTTGATAGGCAAGCAC
TTGAAGATTACGCCCTCCATCCTCAACTTTGAGCAGATGGACAAGAACAA
CTCCCTGTTAAATACTCCGCCGACCTTTGGCATCTATGTGATGGGCCTGG
GTTTCAAGTGGATCAAGCGGAACGGAGGAGTCGCTGGTATGGCCAAGCTG
GCGGCAGCCAAGTCCAAGTTGATTTACGACACGATCAACCAGTCGAATGG
TTTCTACTACTGCCCAGTGGATGTCAATGTGCGTTCGCGCATGAATGTGC
CCTTCCGTATTGCAGTGCCAGTGAGATGATGCCCTGGAGAAGGAGTTCCT
GAGCAAGCGAGCGAGGCATGATCAGTTGAGTCATCGTCGGTGGCGGCATC
GAGCCTCCCTCTACAATGCTGTACGCTGGCGGAGAACCACAGTGGCATCT
GATGCTGCTTTACAGAACAATAAAATGCAGCTTCGAACATCGTGGGCGCG
GGCAGTTATGCTAATAATCTAATCTAACCTATCCCACTAGCTAAGAGATT
CTGTCAGAACTATATGTCTTGGAAATTCTTCCACACT
UFO01578.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11899-RA | 1176 | CG11899-RA | 67..1157 | 8..1075 | 4900 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29200649..29201327 | 52..730 | 3395 | 100 | Plus |
| 3R | 32079331 | 3R | 29201383..29201611 | 730..956 | 1030 | 98.7 | Plus |
| 3R | 32079331 | 3R | 29200520..29200567 | 8..55 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:26:13 has no hits.
UFO01578.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:28 Download gff for
UFO01578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11899-RA | 61..1157 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:40:27 Download gff for
UFO01578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11899-RA | 63..1159 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:20 Download gff for
UFO01578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11899-RA | 61..1157 | 1..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:20 Download gff for
UFO01578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29200514..29200565 | 1..53 | 92 | -> | Plus |
| 3R | 29200651..29201327 | 54..730 | 100 | -> | Plus |
| 3R | 29201384..29201751 | 731..1075 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:28 Download gff for
UFO01578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25026236..25026287 | 1..53 | 92 | -> | Plus |
| arm_3R | 25026373..25027049 | 54..730 | 100 | -> | Plus |
| arm_3R | 25027106..25027473 | 731..1075 | 93 | | Plus |
