UFO01579.5prime Sequence
988 bp (884 high quality bases) assembled on 2008-10-06
> UFO01579.5prime
CAGTCGACATGCCGCAAATTACGGAAAATGGCCAGGATTTTGATGTGGTC
AAATACTTCCTGCAGCTCCTGGACGAGGACAAGGATCTGTCCTCCGGCAT
TGCGGCTATCAGGACTCTGCTAATGATCCTGGAAAAGAAACAATTTGGAA
CCATTCATATTCTACACACAACCATGAGGGAAGCGGTGGCTGCCATGCGG
AATACGGATTTGTCTATAGCAGCCATTGTTTCTGCCGGAGAGCTCTTTTG
CAGGTTCATCACCCTCAGTCTGGACGACAAGCACATGGAGGAGTGCCGGC
AGATTATGTTGAATCGCGGAAAAATCTTCCTCACCAAGTTGCTCAATTCC
CGGCAGGTGATTGCCCAGCAGGCCCAAAGGTTCATTACCGATGGCTGCCG
TATATTGACGCACTCCCGATCCCGGGTGGTCCTCAAGGCGCTGATTACAG
CCTCGCAGAACAAAAAGTCCTTCCACGTTTATGTGACGCAGGGCGGCACG
GGAAACTCTGGCGAAGAGATGGTTAAGGATCTGCATGCGGCCGGCATCGA
TTGCACGCTCATTCTGGACTCAGCCACCGGCTATGTTATGGAATCGGTGG
ACTTTGTGCTTGTGGGGGCTGAAGCCGTGGTGGAGAGTGGTGGCATTATC
AACCGCATTGGCACCTACACCATGGGTCTGTGCGCCCGTGAGATGAAGAA
ACCTTTCTACGTTCTGGCCGAAGCTTCAAGTTCAGCCGTCTGTATCCACT
CAATCAGCGCGATCTGCCAAACGAGTACAAGTACTCCCGCAAACACCTAA
ACGATGTAAGCAAAGTGCACCCGCTGGTCGACTATACGCCACCCGTCTAC
ATCACCCTGCTCTTCACCGACCTCGGAAGACTAACACCCCCGGCCGTAAG
CGACGAGTTGATCAAACTTACTTGCCAAGCTTTCTGACCATTCGTTTGGC
GGCCGGGCCCAGGTAAGGTGGTCATTATTCATAATCTA
UFO01579.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF2B-alpha-RA | 1005 | CG7883-RA | 62..972 | 9..918 | 4515 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29934811..29935082 | 781..511 | 1310 | 99.6 | Minus |
| 3R | 32079331 | 3R | 29935357..29935570 | 358..145 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 29935137..29935294 | 511..354 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 29934615..29934753 | 918..780 | 680 | 99.3 | Minus |
| 3R | 32079331 | 3R | 29935633..29935735 | 144..42 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:53:54 has no hits.
UFO01579.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:27 Download gff for
UFO01579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-alpha-RA | 55..983 | 1..929 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:40:29 Download gff for
UFO01579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-alpha-RA | 43..971 | 1..929 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:27 Download gff for
UFO01579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF2B-alpha-RA | 55..983 | 1..929 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:27 Download gff for
UFO01579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29934615..29934751 | 782..918 | 99 | <- | Minus |
| 3R | 29934811..29935081 | 512..781 | 99 | <- | Minus |
| 3R | 29935137..29935291 | 357..511 | 100 | <- | Minus |
| 3R | 29935359..29935570 | 145..356 | 100 | <- | Minus |
| 3R | 29935633..29935734 | 43..144 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:27 Download gff for
UFO01579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25760337..25760473 | 782..918 | 99 | <- | Minus |
| arm_3R | 25760533..25760803 | 512..781 | 99 | <- | Minus |
| arm_3R | 25760859..25761013 | 357..511 | 100 | <- | Minus |
| arm_3R | 25761081..25761292 | 145..356 | 100 | <- | Minus |
| arm_3R | 25761355..25761456 | 43..144 | 100 | <- | Minus |
