UFO01580.5prime Sequence
1242 bp (978 high quality bases) assembled on 2008-10-06
> UFO01580.5prime
CAGTCGACATGACGTGGAAGAAGCAGATGGCTCTGCTGGCCAAGCCATAC
TACTGGGTTAACATACTCCTGGCCATATCGTACCTTTTGGCCAAAAAGAC
GCAGTTCATCTGCACCCGCCTATTTATTCTCGCCGGAGAGGATGAAGCAT
GCGACCTGGACAGTCGTGAGGTGGAAATCTTGTTCTTCCTGCTAATCGTG
GTGATGATACGGTCACGCAAAACGGGCAGTGTCACCATGATTAACTACTT
GGCCTCGTCGTTCCTCTACACCAAAGTGGCCAACGCCATTTTGTGGGCCT
ACGCGGACTTCCGCTACGGCCTGGGCTTTCTGCTTCTATGCGTCCTGGTG
GGCATGGTGCTGCCGGAGCCCTCGTATCGCGGACCCGAGCACATCACCTA
CTTCCGCAACGCACAGGTCTTCGAGGAGGAATTGGCCAGGGACAAGCGAA
CCAGCTGGCTGATCTGCTTCTACACGGTGTGGAATCCCAGCTGCGTGAAC
TTCGCCCCCGTTTTTGCTGAGCTCTCCGCCGAGTACAACACGGACCACCT
GAAGTTCGGCAAGATTGACATTGGACGCTTTCCGGACGTGGCCCAAAAGT
ATCGCATCTCGGACAGCAGCTTCTCCCGACAGCTACCAACTGTGATCCTG
TTCCAACAGGGCAAGGAGACGGACCGCAGGCCCTGCGTCGATTCCAAGGG
TAAACTGCAAAAGTTCTTCTTCTCCAGCGACAATGTGCGCGCCACCTTTG
GCCTTAACCAGCTGTACAAGGAGGCCATCGAACGACTACCCATTGCGCCC
AAGGAGGCCAAGAAGGCCAGGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATTCATAATCATATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCCTCACCA
TAAAAACGCCGGGCGGCCACCGGAGCGTTCTTGAACAAATCCAGATGGAG
TTCTGAGTTCATTACTGGATTCTATTCAACAGGAGTTCAGCCGAGCCTCG
ATATCAAATTACCGCCCCCGCCCCTGCACTCCATCGCAGTACTTGTTGTA
TTTATTTAAGCATTTTCTGCCGACTTGAGCCATTCCAAACCGCGACATAG
TGACCTGAATCGCCAGCGGCATCAGGACCCTGGTCGCCCTGTCGCATTAT
ATATTTTGCCCATAGTGGGTGAAACACAGGGGCGCCAGAAAG
UFO01580.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11007-RB | 1527 | CG11007-RB | 121..928 | 9..816 | 4040 | 100 | Plus |
| CG11007-RA | 1201 | CG11007-RA | 121..928 | 9..816 | 4040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19503188..19503995 | 9..816 | 4040 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:14:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dtak\R1A2 | 1753 | Dtak\R1A2 TAKR1A2 1753bp | 733..773 | 5..45 | 115 | 75.6 | Plus |
UFO01580.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:50 Download gff for
UFO01580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11007-RA | 114..942 | 1..830 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:40:30 Download gff for
UFO01580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11007-RA | 103..931 | 1..830 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:00 Download gff for
UFO01580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11007-RA | 114..942 | 1..830 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:00 Download gff for
UFO01580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19503181..19504009 | 1..830 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:50 Download gff for
UFO01580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15390686..15391514 | 1..830 | 98 | == | Plus |
