UFO01581.5prime Sequence
1190 bp (659 high quality bases) assembled on 2008-10-06
> UFO01581.5prime
CAATCGACATGGAGGCACTGGACATTCTGGAGAAGCGCATCGATGCCCTG
ACACGAGTCCTGGGTCCGGTCCAGGACTCTGAGGTGGGCGAGGGCGTGGT
CGACGCCCTGTGCTCGGCACACGCCATCCTGGGCGAAGCAACCACAGGAA
GTGCTGCACTGCAGCAGTGCGTGAAGAGATCTGACGAGCTGGAGAAGTAC
CTGGACCCCAACTTCCTGGAGGAGCACCAGCAGGTGCGCTCCAAGGAGGT
GTACCTGCAAGCCGTGGCCCCCGAGCTGCACACGCAGGCCGAGCAGCTGG
AGAGGATTAAGCAGCTGGAACCGGCCCTGGGCGCGGAGTACTTCCGCAGC
ATTCCCGCCGAGTGTCTGGAGCAGCTAAAGGGCATAACGCAGAACAACGG
GGAGTACGCGCAGCAGAGCGAACTTATCGAGGAGAGTCTGGTCCTGGCCA
TGAAGCGATATGGCGAGATCCAGGCGGGACTGCTGAGCTCCCTGGATGCC
ATGAGCGAGCGCTTGGACCAGGTAAAGGAGCGCATGGAGCAGAGGAAGCG
TGCAGAGTTGAGCAAGGATGTGCCCGCCCAAGGATGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGC
TTGGATTCTCACCATTAAAATGCCCCGGCGGCAACCGAGCGTTCCTGAAC
AAATCCAGATGGAGTTCTGAGGTCTTTACTGGATCTATCCACCAGGGAGT
CCAAGGCGAGCTCGATATCAATTACGCCCGCCCTGCCACTCATCCATACT
GTTGTATTTCATTTAGCATTCTGCCGACTGAAGCCTTCACAACGGCATGA
TGAACCTTGATCGCCACGGGCATCAGCAACTTGCTCGCCTTGGCGTATAT
ATTTGGCCCATGGGGAAAACGGGGGCCAAAAGTTGTCCATATTGGCCACG
TTTATTCAACCTGTGAACTCCTCCCTAGGGATTGCCTGAAACGCAAACAT
ATTCCCCATTAACCCTTTAGGAAATGGCCCAGGTTCCCGTCACCGGCCCA
ATCTTTGGCAAATATTTGGTAACTTCCGAATCGCGGTGATTCACCTCCAG
AGGATGAAACGGTTTCTCTCATTTGTGCCCTATGTGTACA
UFO01581.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)06496-RB | 1086 | CG9893-RB | 84..659 | 9..585 | 2845 | 99.7 | Plus |
| l(2)06496-RA | 1174 | CG9893-RA | 84..659 | 9..585 | 2845 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23061935..23062510 | 585..9 | 2820 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:38:51 has no hits.
UFO01581.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:29 Download gff for
UFO01581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)06496-RA | 80..664 | 2..591 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:40:31 Download gff for
UFO01581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)06496-RA | 89..673 | 2..591 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:40 Download gff for
UFO01581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)06496-RA | 80..664 | 2..591 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:40 Download gff for
UFO01581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23061945..23062513 | 2..574 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:29 Download gff for
UFO01581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18949468..18950036 | 2..574 | 99 | | Minus |
