UFO01584.5prime Sequence
1170 bp (975 high quality bases) assembled on 2008-10-06
> UFO01584.5prime
CAGTCGACATGTCACTTGGCAATGCCGATCCCTGGCACTTGAAAAATACT
ATAGTTAAGCAAGGAATCTCCGGGTCCGCGAATAATAGCGAAAGTTTTGA
GGACAACTTCACGCCCTTGCCCTCTGGAAACGAGAGCAACGTCCAAAAGG
ACGGGAAAATCGAGCCCCTTCCGGATTCCAGCGACTATTTAAAGCTACTT
GAGCGGAAGCTGGCCCGGGTGCAGAAGGGCAACAAGTTGTTGGACAACCT
GCGAGACAAGCGGCAGGATTGCATGCGGGGATTGCTGTCTTCGGAGGGAG
TGCCCATTTCCATTTTCGAGCAGTTCCTTGAGCTAGACGCGCCCATCGAA
AGCGGTCGCCTCCATCGGCACCTGCTGCCCGTTCAGGCCGTAAACGTGGG
CGAAACTTTCCACATAGTGGAGCACGACGCTCTGCAGCAGTCGGCAGAAG
AAGCTCAGGAGGAGGAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGC
ATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGC
CAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGA
AAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAACTGG
TGAAACTCACCCAGGGATTGGCTGAAACGAAAACATATTCTCATAAACCC
TTTAGGAATAGGCCAGGTTTCACGTACACGCCACAATCTGCGAATTATAT
GTTGTAGAACTGCCGAAATCGTCTGGTATTCACCTCCAGAAGCGATGGAA
ACGGTTTCAGTTTGCCTCATGAAACGATGTACAGTGAACCTATCCCATAT
CACCAGTCACGCTCATGCCTTCGAATCGAATGAACCTTCACTCAGCCGCC
AGAATAGTGTTATATTACGT
UFO01584.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42558-RA | 1095 | CG42558-RA | 99..559 | 7..467 | 2305 | 100 | Plus |
| CG42557-RA | 1095 | CG42557-RA | 99..559 | 7..467 | 2305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29933636..29933902 | 201..467 | 1335 | 100 | Plus |
| 3R | 32079331 | 3R | 29933385..29933579 | 7..201 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:14:19 has no hits.
UFO01584.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:41 Download gff for
UFO01584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42557-RA | 99..559 | 7..467 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:40:12 Download gff for
UFO01584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7866-RA | 74..534 | 7..467 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:46 Download gff for
UFO01584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42557-RA | 99..559 | 7..467 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:46 Download gff for
UFO01584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29933385..29933579 | 7..201 | 100 | -> | Plus |
| 3R | 29933637..29933902 | 202..467 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:41 Download gff for
UFO01584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25759107..25759301 | 7..201 | 100 | -> | Plus |
| arm_3R | 25759359..25759624 | 202..467 | 100 | == | Plus |
