UFO01589.5prime Sequence
1189 bp (942 high quality bases) assembled on 2008-10-06
> UFO01589.5prime
CAGTCGACATGAGCAATCTGCTGAATTTTGCCCTGCGGCAGGGCGTCAAC
TCCATCAAGCGCCTTAGCCTCCAGAGTTTCAGACTGGCAGCTCCGGCCAT
TGTAACAAAAACGCCGGTTACTTCCACGATAAAGAGATTCTCCTCCCAAG
CCGCCCCCTTCGATGTGAACACCAGTGTCCCCAAGGACATAATACTTTTC
AAGTATGAAAACCCCCGATTCTACCAGATGCTTAACTTTTTCGGGGTGTG
TCAGTTTGTTTTCTGGACATATCTCTCGCACTTCGCCTTCACGACGCTTA
AGGATGCTCCAGTGGTGGAAAAACCCGGAGAGGAGCTGAAGTGGTTCCAG
CGCATAAATCTGGGCGATAATAAGTACAGAAATGGCATTACAGCCTGTAG
CTTTCTGATAGGATATGGCATACTGTTTGCTGTCTGGATGTTTACCCTGC
GATCGGTGCGTTTTCTTATCTTGAGAAAGGGTGGTCAGAGCGTTTCCTTT
GTGACCTACGGTCCCTTCAACCGGAATCGCATTATGACCGTGCCATTAAA
GTGCGTCTCCGCCGAGGAATCACGGAACATGGCCAGGGTGCAGCTACCCA
TTAAGGTGAAGGGCAAGACACTGTATTACGTCCTGGATATGCGTGGCGAG
TTTCGGAATGGCGAGTTATTCGATTACACGGCGGGCCTCAAGCGTCGCAT
TGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTC
ATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCC
TGGTATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAA
CGAGCGTTCTGACAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTAT
CAACAGGAGTCAAGCGAGCTCGATATCAAATTACGCCCCGCCCCTGCCAC
TCATCGCAGTACTGTTGTAAATTCATTAAGCATTCTGCGACATGGAAACC
ATTCAAAACGGCATGATGAACCTGAATCGCCAGCGGCATCACCCCTGTCG
CTTGGGTATAATATTTGCCATGTGAAACGGGGGCAGAAGTGTCTATTTGC
ACGTAATTCAACTGTCACTCCCAGATGCTGACCGAAACATTCTAATAACC
TTAGGAAAAGCAGGTTTACCGGCTACCGCACACACGCGT
UFO01589.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12935-RB | 918 | CG12935-RB | 111..803 | 9..701 | 3465 | 100 | Plus |
| CG12935-RA | 1200 | CG12935-RA | 393..1085 | 9..701 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10809789..10810192 | 9..412 | 2020 | 100 | Plus |
| 2R | 25286936 | 2R | 10810248..10810540 | 409..701 | 1465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:08:14 has no hits.
UFO01589.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:31 Download gff for
UFO01589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12935-RA | 385..1090 | 1..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:40:48 Download gff for
UFO01589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12935-RA | 389..1094 | 1..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:08 Download gff for
UFO01589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12935-RA | 385..1090 | 1..706 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:08 Download gff for
UFO01589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10809781..10810191 | 1..411 | 99 | -> | Plus |
| 2R | 10810251..10810545 | 412..706 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:31 Download gff for
UFO01589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6697286..6697696 | 1..411 | 99 | -> | Plus |
| arm_2R | 6697756..6698050 | 412..706 | 99 | == | Plus |
