UFO01593.5prime Sequence
1243 bp (869 high quality bases) assembled on 2008-10-06
> UFO01593.5prime
CAGTCGACATGCGGTTTGCCCAAATAATTGTGGGCCCGGCAGGCAGTGGC
AAGTCGACGTACTGCAGCTTAATGCAGCAATATGCGATGGACTGCAAGAG
AAATGTTCAGGTGGTGAACCTCGATCCGGCGGCAGAGCACTTCACCTACA
ACCCGCTGACGGACATTCGCGATCTAATCCACCTGGACGATGCCATGGAG
GACGAAGAGCTGCACTACGGACCGAACGGCGGCCTCATCTTCTGCCTGGA
GTTCTTGATCGAGAACCAGGAATGGCTGAAGGAACAGCTCTGCGGCGGCG
AGAACGAGCTGATGGTGGGCGAGCCGGATGATGACTACATCCTGTTCGAC
ATGCCCGGCCAGATCGAGCTCTTCACTCACCTAAAGATGGGCAGACAGCT
GGTGGAACTGCTCGAGTCCTGGAACTTCCGCACATGCGTCGTCTTCTGCT
TGGACTCGCAGTTCATGGTGGACGGGGCCAAGTTCATTTCCGGCACCATG
GCCGCGCTCAGTGTGATGGCCAACATGGAGCAGCCGCACATCAATGTGCT
GACCAAAGTGGATCTGCTGAGCAGCGATGCGCGGAAACAGCTGGAGATGT
ACCTGGAACCGGATGCCCACAGTCTGATGGGCGAGCTGACCATCGGGACT
GGTTTTGGCGAGAAATACGCAAAGCTTACGCAGGCTATTGGCGCGCTAAT
TGAGGATTTCAGTTTGGTGAGATTTTTCCCGTTGGATTCCCAGGACGAGG
AGAGCGTGGGCGATCTTCTGCTACAAATTGACAGTATCTTGCAGTACGGC
GAGGATGCAGACGTGAACGTTAAGGACTTTGATGAACCGGAAGAAAGGGA
TCAGGATGCAAGCTTTCTAGACACATTCGTTTGGCGCGCGGGCCCAGTAA
GTGGTCATAATCATAATCCTAATCATAATCATAATCACAACTAGCCTAGG
AGAATCCTGGTTCATGACTAGTGCTTGGATTCCTCACAATAAAAAACGCC
CGGCGGCAACCGAACGTTCTGAACAAATTCCAGAATGGAGTTCTGAGGTC
TTTTACTGAATCTATCACAGGAATTCCAACCGAGCTCGATCCAAATTACG
CCCCCGCCCCTGCCATCCTATCGAGATCTTTTTGTATATTCATATAAGCA
ATTCGCCGCACCTGAGCCATCCCAAAACGCATGAAGAACCGGAATCTGCG
CCACGGGCTACTTCGACACCTCTTGCTTCGCACTCGTGCGATA
UFO01593.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2656-RA | 1016 | CG2656-RA | 92..941 | 8..857 | 4220 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7144921..7145581 | 52..712 | 3305 | 100 | Plus |
| 3R | 32079331 | 3R | 7151048..7151195 | 710..857 | 710 | 98.6 | Plus |
| 3R | 32079331 | 3R | 7144815..7144860 | 8..53 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:24:57 has no hits.
UFO01593.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:04 Download gff for
UFO01593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2656-RA | 86..945 | 1..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:47:04 Download gff for
UFO01593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2656-RA | 67..926 | 1..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:54 Download gff for
UFO01593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2656-RA | 86..945 | 1..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:54 Download gff for
UFO01593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7144809..7144860 | 1..53 | 92 | -> | Plus |
| 3R | 7144923..7145581 | 54..712 | 100 | -> | Plus |
| 3R | 7151051..7151199 | 713..861 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:04 Download gff for
UFO01593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2970531..2970582 | 1..53 | 92 | -> | Plus |
| arm_3R | 2970645..2971303 | 54..712 | 100 | -> | Plus |
| arm_3R | 2976773..2976921 | 713..861 | 97 | == | Plus |
