UFO01594.5prime Sequence
1198 bp (900 high quality bases) assembled on 2008-10-06
> UFO01594.5prime
CAGTCGACATGGCGTACGTCGATCAAAATGGTCGTCTGTGGGAGAAACGT
CCATGGGACTTGAGACGAGTTTTGGACACATTCGTGGGTATATGGTTCGC
CGTCAAACAGTTGCTTGCATCGTTCCTGTCTCCATTCACTGGAAATGATA
GCAACGGAGATAACTCCCGTCGAGGAAATGGATGGGGAAGTAGTAGCTGG
GGCGGAGGGGGCGGTGGTGGTGGCGGCGGAGGCGGTGGCGGCGGAGGCGG
TGGCGGAGGCGGAGGCGGTAGCGGTTATCGCGGAGGTGGATTAAGGCCTA
ATCGACGAATTGGGCGCATTCCGCCCCCCTCCCAATCCTGCAATGCCGGA
GGATGCTGCGGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTAC
GCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCT
GCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCG
GCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACG
GGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAACTGGTGAAA
CTCACCCAGGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTT
TAGGGAAATAGGGCAGGTTTTTACGTAACACGCCACATCTTGCGAATATA
TGTGTAGAAACTGCCGGGAATCGTCGGTGTTATTCACTCCAGAGCGGATG
AAAACCGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACT
ATCCCATATCCCAGCTCACCGTCTTCATTGCCATACGAAATTCCGGATGA
CATTCCTCAGGCGGGCAAGATGGTGAATAAAGGCCGGAATATACCTGGGC
CAAGTCCTTACGGGTCTTAAAAGGGCGTAATTCAGCGAACGGGCTGGATT
AGAGTTCTGGGACCACCGACCTGAAAGTGCCCTCTCAAGGTGGCTCAT
UFO01594.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1840-RA | 719 | CG1840-RA | 145..498 | 9..362 | 1770 | 100 | Plus |
| CG1840-RB | 716 | CG1840-RB | 145..495 | 9..362 | 1715 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11888716..11888965 | 113..362 | 1250 | 100 | Plus |
| X | 23542271 | X | 11888572..11888657 | 28..113 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:58:33 has no hits.
UFO01594.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:13 Download gff for
UFO01594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1840-RA | 145..507 | 9..373 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:40:32 Download gff for
UFO01594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1840-RA | 139..501 | 9..373 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:55 Download gff for
UFO01594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1840-RA | 145..507 | 9..373 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:55 Download gff for
UFO01594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11888716..11888965 | 113..362 | 100 | == | Plus |
| X | 11888496..11888514 | 9..27 | 100 | -> | Plus |
| X | 11888572..11888656 | 28..112 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:13 Download gff for
UFO01594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11782529..11782547 | 9..27 | 100 | -> | Plus |
| arm_X | 11782605..11782689 | 28..112 | 100 | -> | Plus |
| arm_X | 11782749..11782998 | 113..362 | 100 | == | Plus |
