UFO01595.5prime Sequence
1186 bp (973 high quality bases) assembled on 2008-10-06
> UFO01595.5prime
CAGTCGACATGCCGGAATACAAGAAGCTAGAGGACCAGGAGTCAGATGTG
GAGAACGCAAATAGAACCACCGTCCAGAACACTGCTACCGTTCAGGACGC
CGGGGAGGGACAGAGGCAGGCGGCTGGCCAGCAGGCGGGACAAATGGTGA
CGGTGTCCTTGTTCATGCTTCTTTTCCTCGGCAGCTCCTACTTCCAACCG
CGACCACGACTGCATCAGTACAAGGGGGGCAGGGGCCATGGACTGCTGGA
GAAGTTCGACTGCAACATACAACTGGTGGAATCCATACCCATTGGCCTAA
CATATCCTGACGGCAGTCCACGATTCCTAAGCACTTACGAAGCTTGGCTG
GAGTTATTGGAGAGCGCCACGACCTCACTAGACATAGCATCCTTCTATTG
GACTCTGAAGGCCGAGGATACGCCCGGGGTGTCGGACAACAGCACTCGGC
CGGGCGAGGACGTCTTCGCAAGACTCTTAGCCAACGGAAACGGCGGTAGC
AGGTCGCCCAGGATCAAAATTCGCATTGCCCAGAGCGAACCCTCTAGTGG
CACACCCAATTTAAACACAAAGTTGTTAGCTAGCGCTGGCGCTGCCGAAG
TTGTTAGCATCTCGTTTCCCAAGTACTTTGGCAGCGGAGTGCTCCACACC
AAGCTGTGTGTGGTGGACAACAAGCACTTTTATCTGGGCAGCGCCAATAT
GGACTGGCGGGCACTGACCCAAGTCAAGGAGATGGGCGTGCTAGTCCAGA
ACTGTCCAGAACTGACCCATGATGTGGCCAAGATCTTTGGAGAGTACTGG
TACCTAGCAACAGTGAAAGTTCTCGCATTCCCGACTGGGACTGGCGTTAC
GCGACCAGCTACAACTTGAAACATCCCATGCAGCTGAGTGTAAACAAAAA
ATACTAGCATAGAGGGCTTCCTATCTAGCTCACCGGCCTCCCCTTTCACC
CTCGGCCGAACAGACGGACCTGAACGCCATTCCTCACACTATAACCCGGC
ATAACCTTACGGTAAAATATGGCGATTATGACTATTATCCGCTGAATCCA
TATACCGAAAAGAACACCACTATTGACCATTATCGACGAACGCTCTGAAA
GGCGGCTGTAAACGGGCGTGGCTTGAACCTCTTATTCGTGGGAGCACTCG
AATCCTGTAGGAGCCGATTCTCTGATCCCTGTCGGA
UFO01595.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9248-RC | 1926 | CG9248-RC | 103..1259 | 6..1155 | 5015 | 96.8 | Plus |
| CG9248-RA | 1806 | CG9248-RA | 103..1259 | 6..1155 | 5015 | 96.8 | Plus |
| CG9248-RB | 1757 | CG9248-RB | 54..1210 | 6..1155 | 5015 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21159272..21160053 | 198..980 | 3660 | 99.2 | Plus |
| 2L | 23513712 | 2L | 21159006..21159197 | 6..197 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:33:19 has no hits.
UFO01595.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:33 Download gff for
UFO01595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9248-RB | 62..1237 | 1..1166 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:40:33 Download gff for
UFO01595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9248-RA | 105..1278 | 1..1166 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:18 Download gff for
UFO01595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9248-RB | 47..1222 | 1..1166 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:18 Download gff for
UFO01595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21159001..21159197 | 1..197 | 97 | -> | Plus |
| 2L | 21159272..21160248 | 198..1166 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:33 Download gff for
UFO01595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21159001..21159197 | 1..197 | 97 | -> | Plus |
| arm_2L | 21159272..21160248 | 198..1166 | 95 | | Plus |
