UFO01596.5prime Sequence
1156 bp (954 high quality bases) assembled on 2008-10-06
> UFO01596.5prime
CAGTCGACATGCTGCTGCCAACGGTCAGCGGCCAATCCGCCGCAGGATGC
AAATGGAAAAACTGCTGTCGCCGCAGCTGGGAAATGCTGATGGCGCCCGT
ATCGCCCAAGAACCTCAGGACCACGGCGCTCTTGACGAGCATCTACCAGT
TGTTAATCTCCCACTGCGCCCTTTTCCTGGTTCTCCTGGGACTGGCGCAT
GCCGAACAGATGTGCGAGGTGCTGGAGCTGGACATCTTGGACCAGAAGGA
CAATGGTTTCTACAACATGTCGCCCTTTCACAACGATCTTCGCCTGCAAA
CCGCTGCCCAATTGGCCGTCGCCACGGAGAATCTGCTCTACGTGATGGCT
GGTATCGCGGGTACCTACGCCCTGAGTGCCATATTCCTGTTTTTCGGAGT
CTTCAAAAATCGGCCGGGCCTAATCATACCCTGGCTGGTTGTGGAGTTCC
TATTAATGATTGGTTTGGGGGCACTGGTCTTCATGCTGAGGGATACAAAA
ATCGTGCAATTGCTGGGTGGTCAAGTGCCCTACTTTATCATTTGCTACAT
CTTGATCTGCATGGATTACTGCAAGTGGTATGTGATGCATAGCTTCTACC
AGAGTCTACGCACCATGAATAAGCTTCGAGAGATTGCCACTGTGGCCATA
CCATGTCCAGCTCCAGGAGCCATACCCTATCGTTTCCAACGCGAGCACAT
GTATCTGGGCAGCAATGGATATAAGCACATTTCTAACCGAGTCTCCCGAT
GGACAGTGTGCAAGCTTTCTAGACCATTCGTTTGGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGTCATT
ACTGGATTTATCAACAGAGTCCAAGCGAGCCTCGATATCAATTACGCCCC
GCCTGCACTTATCGCAGTACTGTTGTATTCATTAAGCATTCTGCGAACTG
AAGCACTCCAAACGCATGATGACCTGAATGCAAGCGAATCAGACTTGTCC
CCTTGCTATAAATTTGCCATGGGTAAACCGAGGGCGAAAAAAGTGTGTCC
CATAAT
UFO01596.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fie-RB | 1443 | CG1079-RB | 116..865 | 9..759 | 3730 | 99.9 | Plus |
| Fie-RA | 1600 | CG1079-RA | 273..1022 | 9..759 | 3730 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3893532..3893914 | 152..534 | 1915 | 100 | Plus |
| 3L | 28110227 | 3L | 3892846..3892993 | 9..156 | 725 | 99.3 | Plus |
| 3L | 28110227 | 3L | 3893978..3894114 | 535..671 | 685 | 100 | Plus |
| 3L | 28110227 | 3L | 3894169..3894255 | 672..759 | 390 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:33:22 has no hits.
UFO01596.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:35 Download gff for
UFO01596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fie-RA | 266..1025 | 1..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:40:44 Download gff for
UFO01596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fie-RA | 266..1025 | 1..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:19 Download gff for
UFO01596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fie-RA | 266..1025 | 1..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:19 Download gff for
UFO01596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3893978..3894114 | 535..671 | 100 | -> | Plus |
| 3L | 3894169..3894258 | 672..763 | 96 | == | Plus |
| 3L | 3892839..3892989 | 1..152 | 98 | -> | Plus |
| 3L | 3893533..3893914 | 153..534 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:35 Download gff for
UFO01596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3893978..3894114 | 535..671 | 100 | -> | Plus |
| arm_3L | 3894169..3894258 | 672..763 | 96 | == | Plus |
| arm_3L | 3892839..3892989 | 1..152 | 98 | -> | Plus |
| arm_3L | 3893533..3893914 | 153..534 | 100 | -> | Plus |
