UFO01601.5prime Sequence
1108 bp (1014 high quality bases) assembled on 2008-10-17
> UFO01601.5prime
CAGTCGACATGACGGACGTATCGCATGAACTGGGCGCCTTGCGCTTCGTG
GTGGACTCACCACTGTCCTCCAAGGTGGCCATGTTCAACAACCAGGCCAC
GCAGCACAAGCAGTCGCAGCTGCTGAATCCATTTTCCCAGGACGGACGCG
CCGCCTCGCCGAAACCCACTTTCTCGAAGGATCAGTATGGAAAACCACTG
GCCGGCAGCCTTACAGAGATGCGTGGCCAGAAGGCCAACATCCACGTGAT
GAAGGAGATGCTGGAGCTCTGCCAGATCATCAATTCGGAGGGCTACGACG
TCAAGGACGAGCCCACTATGCGTGTGATCCCCTTCGGCGAACTTTTTAAT
ATCTATAACTACATATCCGACAAGGTGGTGGGCATCCTGCTGCGGGCCCG
CAAACACAAGTTGGTAGACTTCGAGGGCGAGATGTTGTACCAGCGGAGGG
ACGATGACGTTCCCGTCTTTCTGCTGAAGCCCATCAAGGAAATACGCAGT
GAGATGGAGGCCAAGATTGAAGACATCAAGAGGGCGGCTAGTCCAGCGCC
TCCGCAGTCCACCTCGGTGCTGATGGATCGCAGTGCTCACGAACAAAAAC
TGAAGTCGAGGACTCCCTCGCCGGCTGTGGGCAAGTCCGCCAAGTCGAAG
TCAGCGTCGCCGGCACCCAAGGCTCCTGTACCTGTTCCTGCGCCTGCTGC
AGAAGTCACGCCTGTGGCTGGGCCCACAACTTCTGCAGAACCTGCTCCTG
TGGCAGAGTCCACTATGGCAGCAGTTCCAGCTCCGTCTACAGAGCCCACA
CCGGCAACAGCTCCTGCTTCGAGTACCGTTGAGATCGAGCCAGCCAAGCC
AGAGGTGACCGAACAGGCGCCCGTGCTGTGATAGTCACAGAAGCACCATC
TACAGAGAAACCACACCAACCACCAGCGAACCGCAGCGAGAGCACCCCGC
TGCAGTGCACCGGCAGACTGCTGATGACTTACCCACATGTGATGAGCCAC
CGCCGAGTTGTACGCACCGTCAGCGTGGAGCACTGGCGCCAGTCCGACGC
AGCGAGTCCTCGCGGACAGTTCAATCACAAGTCGAGCCGGCAGCTCTGAA
CATCGTTG
UFO01601.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3630-RD | 1672 | CG3630-RD | 203..1278 | 8..1063 | 4860 | 97.9 | Plus |
| CG3630-RC | 1786 | CG3630-RC | 317..1392 | 8..1063 | 4860 | 97.9 | Plus |
| CG3630-RA | 1948 | CG3630-RA | 479..1554 | 8..1063 | 4860 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2171155..2171849 | 351..1032 | 2880 | 97 | Plus |
| X | 23542271 | X | 2170788..2171085 | 53..350 | 1490 | 100 | Plus |
| X | 23542271 | X | 2168188..2168234 | 8..54 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:33:48 has no hits.
UFO01601.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:45 Download gff for
UFO01601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3630-RA | 475..1570 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:33:17 Download gff for
UFO01601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3630-RA | 469..1564 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:16 Download gff for
UFO01601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3630-RA | 475..1570 | 1..1076 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:16 Download gff for
UFO01601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2168184..2168233 | 1..53 | 94 | -> | Plus |
| X | 2170789..2171085 | 54..350 | 100 | -> | Plus |
| X | 2171155..2171903 | 351..1076 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:45 Download gff for
UFO01601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2062217..2062266 | 1..53 | 94 | -> | Plus |
| arm_X | 2064822..2065118 | 54..350 | 100 | -> | Plus |
| arm_X | 2065188..2065936 | 351..1076 | 96 | | Plus |
