UFO01602.5prime Sequence
1086 bp (1012 high quality bases) assembled on 2008-10-17
> UFO01602.5prime
CAGTCGACATGCCCAGCATCAAGTTGCAATCTTCGGATGAGGAGATCTTT
GACACGGATATCCAGATCGCCAAGTGCTCCGGCACTATCAAGACCATGCT
GGAGGACTGCGGCATGGAGGACGATGAGAATGCCATTGTGCCGTTGCCCA
ATGTGAATTCGACGATTCTTCGCAAGGTGCTTACCTGGGCTCACTACCAC
AAGGACGACCCCCAGCCAACGGAGGATGATGAGAGCAAGGAGAAGCGCAC
AGACGACATTATCTCATGGGATGCAGATTTCCTAAAAGTCGACCAGGGCA
CACTGTTTGAGCTGATATTGGCAGCGAACTATCTGGACATTAAGGGCCTT
CTGGAGCTCACCTGCAAGACTGTTGCAAACATGATTAAGGGAAAGACTCC
CGAGGAAATACGCAAGACCTTCAACATTAAGAAGGACTTTTCGCCCGCCG
AGGAGGAGCAGGTGCGCAAGGAGAACGAGTGGTGCGAGGAGAAGGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCAT
GACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGC
GTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAA
CAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCA
TCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATC
ACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGC
CTTGCGTATAATATTTGCCCATGGTGAAACGGGGGCGAAGAAGTTGTCCA
TATTGGCCACGTTTAAATCAAACTGGTGAAACTCACCCAGGGATTGCTGA
GACGAAAACATATCTCATAACCCTTTAGGAAATAGCCAGGTTTTCACGTA
CCCGCCACATCTGCGATATATGTTGTAGAACTGCGATCGTCTGCATTCAC
TCGAGCGATGAACCGTCAGTTGCTCATGAACGGTAC
UFO01602.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SkpA-RI | 826 | CG16983-RI | 37..522 | 9..494 | 2430 | 100 | Plus |
| SkpA-RH | 1544 | CG16983-RH | 755..1240 | 9..494 | 2430 | 100 | Plus |
| SkpA-RA | 1087 | CG16983-RA | 298..783 | 9..494 | 2430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 657110..657595 | 9..494 | 2430 | 100 | Plus |
| 2R | 25286936 | 2R | 12139446..12139797 | 490..139 | 440 | 75 | Minus |
| X | 23542271 | X | 19812810..19813228 | 12..427 | 260 | 71.4 | Plus |
| X | 23542271 | X | 19816453..19816565 | 315..427 | 250 | 81.4 | Plus |
| X | 23542271 | X | 19816147..19816292 | 12..157 | 235 | 77.4 | Plus |
| 2L | 23513712 | 2L | 17581473..17581534 | 12..73 | 220 | 90.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:34:15 has no hits.
UFO01602.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:55 Download gff for
UFO01602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpA-RD | 683..1174 | 9..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:33:19 Download gff for
UFO01602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpA-RF | 119..610 | 9..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:30 Download gff for
UFO01602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SkpA-RA | 298..789 | 9..500 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:30 Download gff for
UFO01602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 657110..657595 | 9..494 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:55 Download gff for
UFO01602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 551143..551628 | 9..494 | 100 | == | Plus |
