UFO01606.5prime Sequence
1148 bp (1045 high quality bases) assembled on 2008-10-17
> UFO01606.5prime
CAGTCGACATGGAAGTTGATGCGCCAACAACGCAGGAAACCAGTGACACT
CATCATCATCACCATAGTACTTATCACCAGCAGCTGCATCAGATCTCGCC
CAGCGATTACCACTCGGAGGCATCCATGAATTTTGATCATTTGCAAGACC
TGAGGGCCGATGCCATGGCCTCCTCATCCCCATCCGGATCCGGAGGTGGT
GGCAATGGCGGGAACAGCTCCTACGGACTCGTCGACGATAGTAGAGCTCT
GGACAGACCATTTAACGCCAGCGAGAGATTTGTCACCATACTGGATAGTT
TGGATGCACGTGTGGAGAAGCTGCGCAAGGATGCACTCAACCTGCAGGAG
AAGAAAGACTACCTTCTGATGTCCATGGATCTGATCAAGAGCAACGAAAT
GATGCAGAACATGAGCGAAGCTGAACGAGAGGAGATCATTTTGTACCTAC
AACGGGTGAGCTCTCGCTTGGCCACCGTGGAGCTGCGTGTGCGCACTGTT
CGGGACAACTCTCAGGAGGATTCCCTTAGCCAGATAAATGTATTGATTGA
CAGCATGATCAAGATGGGTGATCCCGTGATCGGACGCCAACGATGCCAGT
TTTACTTAAACGCCTGCTGCAGCAGCTCAATGGATCCATCCGGACACATG
GACACCGTGCCCGAGGCCGATGTTGGGCCGGTCGACAAGAAGTTCGAGAG
CGTTTTGCTTGGCTGCACTCTGGACGATCAGAAGAACATCAAGAAGCGGC
TCCAGGCCTTAATGGCTTATCTGAATAAGCAAACTGTTAGCCATGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCAT
GACTAGTGCTTGGATTCTTCACCAATAAAAACGCCCGGCGGCCACCGAGC
GTTCTGACAATCCAGATGGAGTTCTGAGTCATACTGGATCTATCACAGAG
TCAGCGAGCTCGATATCAAATACGCCCGCCTGCCCTCATCGCAGTACTGT
TTATTATTAGCATTCTGCGACTGAGCATCCAACGCATGATGACTGATCGC
CAGCGCATCAGCACTTGTCCTGCCTATATATTGGCATGTGAAACGGGC
UFO01606.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7945-RA | 1451 | CG7945-RA | 555..1340 | 9..794 | 3930 | 100 | Plus |
| CG7945-RB | 1275 | CG7945-RB | 625..1164 | 255..794 | 2700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15521822..15522197 | 794..419 | 1880 | 100 | Minus |
| 3L | 28110227 | 3L | 15522968..15523215 | 256..9 | 1240 | 100 | Minus |
| 3L | 28110227 | 3L | 15522360..15522504 | 420..276 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:37 has no hits.
UFO01606.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:25 Download gff for
UFO01606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7945-RA | 549..1345 | 1..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-17 12:33:21 Download gff for
UFO01606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7945-RA | 504..1300 | 1..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:03 Download gff for
UFO01606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7945-RA | 549..1345 | 1..802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:03 Download gff for
UFO01606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15522968..15523221 | 1..256 | 98 | | Minus |
| 3L | 15521817..15522195 | 421..802 | 98 | <- | Minus |
| 3L | 15522360..15522502 | 278..420 | 100 | <- | Minus |
| 3L | 15522560..15522580 | 257..277 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:25 Download gff for
UFO01606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15514917..15515295 | 421..802 | 98 | <- | Minus |
| arm_3L | 15515460..15515602 | 278..420 | 100 | <- | Minus |
| arm_3L | 15515660..15515680 | 257..277 | 100 | <- | Minus |
| arm_3L | 15516068..15516321 | 1..256 | 98 | | Minus |
